Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00026 ATGGCAATGGCAAAAGTAAATGTGGGTAGTTGgatgatggtggtgatggtgatggtgatggtgagcatggtggaaggagggagttggtgcgtggCGAAGATTGGGGCGAACGAGGAAGCACTGCAGACAGCACTGGACTCTGCTTGCGGAGGCGGTGGAGCTGATTGCGCTCCCATTCAGCCCGATGGTCTCTGTTACATTCCCAACACCCTTCAAGCTCACGCTTCTTATGCCTTCAACACCTTCTACCAGCGTAATGCCAGAGCTCCCGACGCATGCCTCTTCTCCGGAACATCCACCATCGCTCAAACCGATCCCAGCTATGGATCTTGCATCTACCCTTCCTTCGCAGCCTCACCAACAAGAACTGTTGGAGTAACAAATACAACAGTAACAACACCACCTACCAGTACCATAACAAGTCCAATCCATGGAGGAGATGGTGCAGCATCAGCATCAGGAATGAACCCTCTAATCCCTGAAAATTCTGGAGCACCTTCAAAGACAATGGCCACCTCCTCATTTTTTGTTTTCCTTCTCATTCTGCTCCTTATCCCTTAG 561 0.4439 MAMAKVNVGSWMMVVMVMVMVSMVEGGSWCVAKIGANEEALQTALDSACGGGGADCAPIQPDGLCYIPNTLQAHASYAFNTFYQRNARAPDACLFSGTSTIAQTDPSYGSCIYPSFAASPTRTVGVTNTTVTTPPTSTITSPIHGGDGAASASGMNPLIPENSGAPSKTMATSSFFVFLLILLLIP 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00026 186 PANTHER CARBOHYDRATE-BINDING X8 DOMAIN SUPERFAMILY PROTEIN 13 153 - -
Cca01g00026 186 Gene3D - 22 119 - -
Cca01g00026 186 PANTHER BETA-1,3 GLUCANASE 13 153 IPR044788 -
Cca01g00026 186 Pfam X8 domain 29 99 IPR012946 -
Cca01g00026 186 SMART X8_cls 28 113 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00026 Cca-Chr1 297325 299091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00026 25 115 Glycoside Hydrolase AT4G26830 51.648 1.49e-30 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00026 - - gmx:100306413 202.216