Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00022 ATGAGTGCAGAGATTGATTCAACTTCTGCTCCTGAACCTCACAAAATGTCTGGACCTTCATCTGCAGCAACTACTAGTGGCCAGAAGCTCTCTATATTTGCTGCCAAATCTGGATTTGTCATCCCTAAAAACAAGTTGTCAGGGTCACTGGTCCCTATTTTCCGAGGGGCTAAAAAGCACAGGGTCACTGGAGCCATCAATGAAGAAAGTTCAAAACAAAGTGAGAGGAGATCAAAATGGGGACCTGATCTGACACAAGATGCAACCGTCAGGAGGGGAAAAGTTTTAGCTTTGCAGATTCGAGTGGATCAAATTACAAGGCAGTTGGAATCAGAAAAGCTTGAAGCTGGGGACACCCAGAACTTGGCACTGATGGCTGAGAATCCAGATAACAGCAAATCTGGCCCTCAAATTGACAGCAAGAAGTCAGAAATTCTCGAACTTGAAAAGCGAGAGGCAATAGGTGAAATACTAAAATTAGATCCCAGTTACAAGCCTCCATATGGTTTTAAACCATTGTTAAAAGAAGCGAACATTCCTTTGCCTGTCCAAGAATATCCATGGTACAATTTTGTTGGTCTAATATATGGTCCTGAAGGTGATAACCAAAAACGACTAGAAAAGGAAACTGGTGCCAAGATAAAAATGCATGGAACCAAAGCAGACACCGGAGAGAAAGGTGAAATTAAACCTGGAACTGATATCCAGTGCAGTTACAAAGAGATGCATGTCAACATATCAGCTGATAGTTTTGATAAAGTGGACGCAACAATGTCAATCATTGAGCTGCTAATTACCTCTGTAACTGGGAATTTAGCTGCTGGTTCTACAACCCCTACATCAGTTTCTAGGGACAGCACTAATGTTCTGAGTCAAAGGCAAGAAGGCCCCCCTTCTCATGCAGATTCTCTAACTCTCGAAAATCAGGCTGTGTTGCAACCTGTAGCTGTTACACAAATGCATGGAGATAACTTCCAATACTCTGGTCCATGGTTTTCAGCGGTTCCATCTCATAGGCCTGTGTTTGCTTCGTCTGGCAGTGTAGCCCCCCAAAATCCACCAGGTCTTGCTAGAACTCCCCATTTTCCATCACAAACTTCAAACATGGCTTCGACTTTTGGTGCCCAACCTGTACCTGTTGCTGGATTTCAGCAGATTATTCCAAATCAAAATGTTTCTGTGCAAGCACCACCACCAAGACATATTTTACAGTATCCGCATATGACTCAGGCACGTCCTTTGGGTAACCTTGGCCCCCCAAGAAATCCTTCTATAATATCTGTACAGAATATGTCAACTCCAACAAATGCTTCACTTTCATTTCCTGTTACTTTAAGCCAATCAACGGCAATAGGACAACATCAGACATCAGTGTCATCAATGCATCTACCTATATCTGGTATATCACCATCACCGATACCTAACCAGCCATTGACCTATCTTGGGGTCTCTTCTGGCCATAATGAAGCCCCTGTCACTGTTAAAATGTCTGTAGGTCCCAGCAATATGGGGCCAATGGCTCCACCAGTGGTTCCACCTGCAAGACCTGTTTCTCTACATCAACAACCGGATGTTGCATTCAAGCCTCCACTGTCAAACATGTCAATGATGCCACAATCTGCCACCTTTCCTCCACATCAAGTAGGAATTTCCTCTGGACCACCATCATCTTCTTTGAGACCCATGCCTGTACCAATAGCTGCACCTACACATTCATCTGTAAACCATTTATCGGGACCTGTTTCATTTCCTTCACCTGGAATATCCCCTTCACTTCCATTACCTCAGCAAGCAGGAATACCTAATTCTGCTTCTGGAGCTTCTCCTTATCACGCCCATGTAAAACCACCGGTCTCGGTGACATCAAAATCTGGAAATTTTACTTTTCGATCACATCCACCCAATGCAGACTACAGCCAAGTGGTTTCTGGACCAAACAATCAAGCAGGTCCCATGCAAGAGCCACCTTCTGGTCCACGACCTCCACCATTTGGGTTTGTTGTGCCTGATCGGCCTCTTCAAATCTTTCCTAGGACACAATTCCCCGATCAAGTGGATAAAACAATCCCCTTTGGAGGGATTTCAGGTTCCATCTCGAACTCAATTCCACCACCCAGACATGCTGCATTTCCATATGCTGGTCAACCTGCACCTAGATCTTCAGTCCCACAAATGGGTATGAAGAACTTCATTTCTGCGCCTCAAATGCCAAATTTGAACAGTGCTGGTGCCGAAAGAGGCATGCCTATTCGACAAAGCTATCCTGTTCATATGACACGGCCAGATATCCCAATGCCTCTGAATCACAAGTTTGCCAACAATCCCCCCATGACTTCTGGTAAGCTACCTTCTGACCAAATTTATGATCCCTTTTCACCCACTTCTGCACCTCCACAACAGAAAGGTAATCCTGGAAAATGA 2421 0.4457 MSAEIDSTSAPEPHKMSGPSSAATTSGQKLSIFAAKSGFVIPKNKLSGSLVPIFRGAKKHRVTGAINEESSKQSERRSKWGPDLTQDATVRRGKVLALQIRVDQITRQLESEKLEAGDTQNLALMAENPDNSKSGPQIDSKKSEILELEKREAIGEILKLDPSYKPPYGFKPLLKEANIPLPVQEYPWYNFVGLIYGPEGDNQKRLEKETGAKIKMHGTKADTGEKGEIKPGTDIQCSYKEMHVNISADSFDKVDATMSIIELLITSVTGNLAAGSTTPTSVSRDSTNVLSQRQEGPPSHADSLTLENQAVLQPVAVTQMHGDNFQYSGPWFSAVPSHRPVFASSGSVAPQNPPGLARTPHFPSQTSNMASTFGAQPVPVAGFQQIIPNQNVSVQAPPPRHILQYPHMTQARPLGNLGPPRNPSIISVQNMSTPTNASLSFPVTLSQSTAIGQHQTSVSSMHLPISGISPSPIPNQPLTYLGVSSGHNEAPVTVKMSVGPSNMGPMAPPVVPPARPVSLHQQPDVAFKPPLSNMSMMPQSATFPPHQVGISSGPPSSSLRPMPVPIAAPTHSSVNHLSGPVSFPSPGISPSLPLPQQAGIPNSASGASPYHAHVKPPVSVTSKSGNFTFRSHPPNADYSQVVSGPNNQAGPMQEPPSGPRPPPFGFVVPDRPLQIFPRTQFPDQVDKTIPFGGISGSISNSIPPPRHAAFPYAGQPAPRSSVPQMGMKNFISAPQMPNLNSAGAERGMPIRQSYPVHMTRPDIPMPLNHKFANNPPMTSGKLPSDQIYDPFSPTSAPPQQKGNPGK 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00022 806 MobiDBLite consensus disorder prediction 64 85 - -
Cca01g00022 806 MobiDBLite consensus disorder prediction 540 557 - -
Cca01g00022 806 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN 23 800 - -
Cca01g00022 806 MobiDBLite consensus disorder prediction 540 582 - -
Cca01g00022 806 Gene3D K Homology domain, type 1 170 295 IPR036612 GO:0003723
Cca01g00022 806 MobiDBLite consensus disorder prediction 619 651 - -
Cca01g00022 806 Coils Coil 95 115 - -
Cca01g00022 806 MobiDBLite consensus disorder prediction 274 304 - -
Cca01g00022 806 MobiDBLite consensus disorder prediction 597 660 - -
Cca01g00022 806 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 177 270 IPR036612 GO:0003723
Cca01g00022 806 MobiDBLite consensus disorder prediction 1 26 - -
Cca01g00022 806 PANTHER RNA-BINDING PROTEIN RELATED 23 800 IPR045071 -
Cca01g00022 806 MobiDBLite consensus disorder prediction 788 806 - -
Cca01g00022 806 MobiDBLite consensus disorder prediction 64 82 - -
Cca01g00022 806 MobiDBLite consensus disorder prediction 770 806 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00022 Cca-Chr1 241809 248114 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00022 K13095 - gmx:100777227 1263.06