Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00021 ATGGTTTGGAAAAGCAAAAGCCTCTCCTCCATGTTACTACTGCTGCTACTAGTGTTGGTTGGTTTTGCAAACTCAGATTTAAGCAAAGACAGAGAAGAGTGTGCAGACAAACTAATTGGTCTAGCTAGTTGTGTTCCTTACGTGGGTGGGGAAGCCAAAACCCCCACCATAGATTGCTGCAGTGGCCTCAAAGTGGTCCTTGATGAGAGCAAGAAATGCATCTGCATCCTCATCAAGGATCGCAATGACCCCAATCTTGGCATCAAGATCAATGCCACACTCGCTGTTCATCTCCCAAGTGCTTGCCACGCACCTGCTAATATATCTCAGTGCGTAGATCTTTTGCATTTGGCACCCAACTCTCCTGATGCTAAGCTGTTTGAGGGGTTCGAAAAATCAGCCAAAACAAACACTTCCTCCACCCCAGTTTCCAGTGGTGGTGCTACTGCTACTGCTGAGAAGGGATCAAGTCAAAGTGCTGAGGAAAAGAGTGATGCTGTGTCCATAAAGAGGTGTCTGCTGCTTTGCTCTATCTTACCATTTCTCTTCCTCTTTGTTTGA 561 0.4635 MVWKSKSLSSMLLLLLLVLVGFANSDLSKDREECADKLIGLASCVPYVGGEAKTPTIDCCSGLKVVLDESKKCICILIKDRNDPNLGIKINATLAVHLPSACHAPANISQCVDLLHLAPNSPDAKLFEGFEKSAKTNTSSTPVSSGGATATAEKGSSQSAEEKSDAVSIKRCLLLCSILPFLFLFV 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00021 186 MobiDBLite consensus disorder prediction 135 160 - -
Cca01g00021 186 Pfam Probable lipid transfer 28 111 IPR016140 -
Cca01g00021 186 Gene3D - 31 111 IPR036312 -
Cca01g00021 186 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 10 172 - -
Cca01g00021 186 SMART aai_6 34 111 IPR016140 -
Cca01g00021 186 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 10 172 IPR043325 -
Cca01g00021 186 MobiDBLite consensus disorder prediction 135 157 - -
Cca01g00021 186 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 33 112 IPR036312 -
Cca01g00021 186 CDD AAI_LTSS 41 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00021 Cca-Chr1 238783 239861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00021 6 164 Acyl Lipid Metabolism Gene Families AT1G55260 48.765 8.32e-52 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00021 - - pvu:PHAVU_001G268300g 267.7