Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00019 ATGTACACAGTGTCAAGTTCAATCCTTGTGAGGTGGCCTGGGATATGTTGTTATCCCAAAACGAGAGTTGGCAACGGCACTCGTGCTATTTCCGTAGCAGTAGCAGCCACAGGCAAAGATGTGTGGAGCCGGACATCATCGTCCAACACGAGCACGAACACGAACAGGTACCTGGACCGCAGCGTGGACATGGAGGAGCTACTGGCTGCAATTGGGCAGACCCAGAACGAGGATGAACTGTATGCGGTAATGTCCCCCTACAGCGCCAGGCAGCTTTCCATTCGTTTCATGGTTTCCCTTCTCTCACGCGAGCCCGATTGGCAACGGGCTCTTGCCCTCCTCGATTGGATCAACGACAAGGCCCATTATTCTCCCTCCCTCTTCGCCTACAACGTCGTTCTCCGCAACGTCCTTCGTGCCAAGCAGTGGCACCTCGCACACGGCCTGTTCGACGAAATGCGCCACAAGGGCCTTTCCCCCGATAGGTACACTTACTCCACCCTCATTACTTCTTTCGGCAAACACGGCTTGTTTGATTCTTCTCTCTTTTGGCTCCAGCAGATGGAGCAAGACAACGTTCCCGGCGACCTTGTCCTCTACAGTAATCTCATTGAGCTTGCCCGCAAGTTGTGCGATTATTCCAAGGCCATTTCCATTTTCACCCGCTTGAAAGCCTCCACCATTACCCCCGACCTCATTGCCTATAACTCCATGATCAATGTCTTTGGAAAAGCCAAGCTCTTCCGCGAGGCCACCCTTCTTCTCCGTGAGATGAGAGACAATGGCGTTCATCCCGACACCGTCAGCTATTCCACGCTTCTTGCCATCTACGTTGACAACCAAAAGTTTGTTGAGGCCCTCTCTCTGTTCTCTGAAATGAATGAAGCCAAATGCCCCCTTGACCTCACCACATGTAACATCATGATTGATGTTTATGGCCAGCTTCACATGGCCAAGGAAGCCGACCGCCTCTTCTGGAGCATGAGGAAAATGGGGATTCAACCCAATGTGGTTAGCTATAACACTCTCTTGAGGGTTTATGGAGAGGCTGAGTTGTTTGGGGAAGCCATCCATCTGTTTCGATTGATGCAAAGTAAGGATGTACAGCAAGATGTCGTCACCTACAACACCATGATTAATATCTATGGCAAGACTCTTGAGCACGAGAAGGCTACCAATCTCATTCAAGAAATGAAGAAAAGGGGTATCGAACCCAATGCAATCACTTATTCCACCATAATATCTATATGGGAAAAGGCTGGGAAGCTGGACCGGGCTGCCATCTTGTTTCAAAAATTAAGGAGTTCAGGCGTTCGAATTGATGAGGTTCTTTACCAGACAATGATTGTAGCATATGAGAGGGCGGGTTTAGTTGCTCATGCAAAGCGTCTACTTCATGAGCTCAAGCGACCGGACAACATTCCCAGGGAGACTGCAATTGCAATTCTCGCCAGAGCTGGTAGAATTGAAGAGGCTACCTGGGTTTTCCGCCAGGCTTTTGATGCTGGAGAGCTGCGTGAATTTGATAAGGCAGATGCTTTATATAGACAGATGCATGAAGAAGGGTGTGTTTTTCCGGATGAAGTTCATTTCCAGATGCTGAGTCTATATGGTGCAAGAAAGGATTTCATGATGGTAGACTCTTTGTTTGAGAAGCTGGATTCTAATCCTAACATAAACAAGAAGGAATTGCATCTTGTTGTTGCTAGCATCTACGAGAGAGCAGATAGACTTAATGATGCTTCCCGAATCATGAATAGGATGAGTCAGAAAGCAAACAGAAGGGTTGCGCGCACAACTGAGGGGGTTCGGTGGGGGGTTTCCGCACGGCAGAGGGGTTCCGGTCTGGGGGTTTCGCGCGGCGGAGTTTTCCAGACATGCATGCACTCTGAGAACATGGCCAACGGAGGGAGTCGACCAAGAACAATAACAGGGATAAGAACCGTTGCTTCTGCAAGCAACAAAGAGAAAAATTTAAGAACGAACGCTGCCACGTAG 1998 0.4915 MYTVSSSILVRWPGICCYPKTRVGNGTRAISVAVAATGKDVWSRTSSSNTSTNTNRYLDRSVDMEELLAAIGQTQNEDELYAVMSPYSARQLSIRFMVSLLSREPDWQRALALLDWINDKAHYSPSLFAYNVVLRNVLRAKQWHLAHGLFDEMRHKGLSPDRYTYSTLITSFGKHGLFDSSLFWLQQMEQDNVPGDLVLYSNLIELARKLCDYSKAISIFTRLKASTITPDLIAYNSMINVFGKAKLFREATLLLREMRDNGVHPDTVSYSTLLAIYVDNQKFVEALSLFSEMNEAKCPLDLTTCNIMIDVYGQLHMAKEADRLFWSMRKMGIQPNVVSYNTLLRVYGEAELFGEAIHLFRLMQSKDVQQDVVTYNTMINIYGKTLEHEKATNLIQEMKKRGIEPNAITYSTIISIWEKAGKLDRAAILFQKLRSSGVRIDEVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRETAIAILARAGRIEEATWVFRQAFDAGELREFDKADALYRQMHEEGCVFPDEVHFQMLSLYGARKDFMMVDSLFEKLDSNPNINKKELHLVVASIYERADRLNDASRIMNRMSQKANRRVARTTEGVRWGVSARQRGSGLGVSRGGVFQTCMHSENMANGGSRPRTITGIRTVASASNKEKNLRTNAAT 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00019 665 Pfam Pentatricopeptide repeat domain 288 349 IPR002885 -
Cca01g00019 665 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Cca01g00019 665 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 231 265 IPR002885 -
Cca01g00019 665 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 161 195 IPR002885 -
Cca01g00019 665 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC 30 506 - -
Cca01g00019 665 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC 503 592 - -
Cca01g00019 665 Gene3D Tetratricopeptide repeat domain 327 398 IPR011990 GO:0005515
Cca01g00019 665 Gene3D Tetratricopeptide repeat domain 399 471 IPR011990 GO:0005515
Cca01g00019 665 Pfam PPR repeat 443 470 IPR002885 -
Cca01g00019 665 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
Cca01g00019 665 PANTHER OS03G0856100 PROTEIN 30 506 - -
Cca01g00019 665 PANTHER OS03G0856100 PROTEIN 503 592 - -
Cca01g00019 665 Gene3D Tetratricopeptide repeat domain 472 635 IPR011990 GO:0005515
Cca01g00019 665 SUPERFAMILY HCP-like 189 402 - -
Cca01g00019 665 Pfam PPR repeat family 371 414 IPR002885 -
Cca01g00019 665 Pfam PPR repeat family 230 274 IPR002885 -
Cca01g00019 665 Pfam PPR repeat family 125 172 IPR002885 -
Cca01g00019 665 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
Cca01g00019 665 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Cca01g00019 665 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 126 160 IPR002885 -
Cca01g00019 665 TIGRFAM PPR: pentatricopeptide repeat domain 163 194 IPR002885 -
Cca01g00019 665 TIGRFAM PPR: pentatricopeptide repeat domain 373 407 IPR002885 -
Cca01g00019 665 TIGRFAM PPR: pentatricopeptide repeat domain 234 267 IPR002885 -
Cca01g00019 665 TIGRFAM PPR: pentatricopeptide repeat domain 129 161 IPR002885 -
Cca01g00019 665 TIGRFAM PPR: pentatricopeptide repeat domain 268 301 IPR002885 -
Cca01g00019 665 TIGRFAM PPR: pentatricopeptide repeat domain 504 527 IPR002885 -
Cca01g00019 665 TIGRFAM PPR: pentatricopeptide repeat domain 304 337 IPR002885 -
Cca01g00019 665 TIGRFAM PPR: pentatricopeptide repeat domain 338 371 IPR002885 -
Cca01g00019 665 Gene3D Tetratricopeptide repeat domain 69 208 IPR011990 GO:0005515
Cca01g00019 665 Gene3D Tetratricopeptide repeat domain 209 319 IPR011990 GO:0005515
Cca01g00019 665 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 300 IPR002885 -
Cca01g00019 665 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 441 475 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00019 123 555 Glycosyltransferase AT1G05670 23.297 8.83e-37 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00019 - - gmx:100782934 944.11