Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00018 ATGAGTTTATCATTTTCTTTCCTGACAGCAAAGCCTTGTTCCATCAGTGGGAGCAATAGGAAACCATGTTGTAGCCGTAGAGGTTTTGATGTTATAAGGTCAGAAGTAACCATGGCACCCAGAGAAAGAAGCCAGTTGTCAAAACAAGGACTTCCTCTTGCTGATTTACATGTACAAGAGGTTGTTCACAGGCAGTCTCAGATAATTAGTCCTTGTAGCATGCCTAAGCCACAGTTCGATCCCAGTTTTCTGAATGATGCCTATGAAATGTGCAGAAATATCTGCGCGGAATATGCCAAGACCTTCTATCTAGGAACCTTGCTTATGACGGAAGAAAGACAGAAAGCTATATGGGCAATTTATGTTTGGTGCAGGAGGACGGATGAGCTGGTAGATGGTCCTAACGCTGAGTATATGAGCTCTGCTGTTCTTGATAGGTGGGAAGATCGATTGCACAACATTTTTAATGGACATCCGTATGATATGCTTGATGCTGCTCTTACTGATACCGTCTCCAAGTTTCCCTTGGATATTAAGCCTTTCAGGGACATGATACAAGGCATGAGAATGGATACAAGGAAGACCCGATACAACAATTTCCAAGAGTTATATCTTTACTGCTACTATGTGGCAGGAACTGTTGGCTTAATGAGTGTTCCAATAATGGGTATAGCCCAGGAGTCTGTCATCCCTGTTCAAAGGGTATACGATTCAGCACTATATCTTGGTATAGGAAATCAACTCACAAACATTCTTAGAGATGTAGGCGAGGATGCATTAAGAGGTAGAGTCTACCTTCCCCAAGATGAACTAGCCCAGTTTGGTTTATGTGACAAGGATGTTTTTTCAAGAAAGGTCAGTGAAAGATGGAGAAAGTTTATGAAACATCAAATTACAAGGGCAAGATTCTACTTCAACCGGGCAGAAGAAGGAGTTCCTCAGCTCGAAAAGGCCAGCCGTTGGCCGGTTTGGTCCTCATTGATATTGTATCGTAAAATCCTGGATGCAATTGAAGACAACGATTACAACAATTTGACTAAACGAGCCTGTGTGGGACGAACAAAGAAATTTTTGACGTTGCCTTTAGCTTATACTAGATCCATCTCAGATCCCAAAACGAAATTTCTTCCAAGGCTTATCTAG 1143 0.4199 MSLSFSFLTAKPCSISGSNRKPCCSRRGFDVIRSEVTMAPRERSQLSKQGLPLADLHVQEVVHRQSQIISPCSMPKPQFDPSFLNDAYEMCRNICAEYAKTFYLGTLLMTEERQKAIWAIYVWCRRTDELVDGPNAEYMSSAVLDRWEDRLHNIFNGHPYDMLDAALTDTVSKFPLDIKPFRDMIQGMRMDTRKTRYNNFQELYLYCYYVAGTVGLMSVPIMGIAQESVIPVQRVYDSALYLGIGNQLTNILRDVGEDALRGRVYLPQDELAQFGLCDKDVFSRKVSERWRKFMKHQITRARFYFNRAEEGVPQLEKASRWPVWSSLILYRKILDAIEDNDYNNLTKRACVGRTKKFLTLPLAYTRSISDPKTKFLPRLI 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00018 380 CDD Trans_IPPS_HH 89 356 IPR033904 GO:0004311
Cca01g00018 380 ProSitePatterns Squalene and phytoene synthases signature 2. 242 267 IPR019845 GO:0016765
Cca01g00018 380 SFLD Phytoene synthase like 85 365 IPR044843 GO:0004311
Cca01g00018 380 ProSitePatterns Squalene and phytoene synthases signature 1. 206 221 IPR019845 GO:0016765
Cca01g00018 380 Gene3D Farnesyl Diphosphate Synthase 81 362 IPR008949 -
Cca01g00018 380 SFLD Squalene/Phytoene Synthase Like 85 365 IPR002060 GO:0009058
Cca01g00018 380 Pfam Squalene/phytoene synthase 98 353 IPR002060 GO:0009058
Cca01g00018 380 PANTHER PHYTOENE SYNTHASE, CHLOROPLASTIC 8 374 - -
Cca01g00018 380 SUPERFAMILY Terpenoid synthases 86 368 IPR008949 -
Cca01g00018 380 PANTHER BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE 8 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00018 Cca-Chr1 206321 208293 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00018 K02291 - gmx:100782394 659.833