Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00008 ATGGGAAGGGTAATGTTTGTGATCTTGCTATGGCTGTCGGCCGGGACATTATTGTCGGTGGTCCGGGGTGAAGACCCTTATCTGTTCTTTACATTTAACGTTACTTACGGCACTATCTCTCCATTGGGTATACCCCAGCAAGGCATTCTCATCAACGGGCAATTTCCAGGACCCAATATCAATTGCACCAGCAACAATAATCTTATGATCAATGTGTTCAATAATCTGGACGAGCCATTCCTTTTGACATGGCATGGTATCCAACAAAGAAAGAATTGCTGGCAAGACGGGGTTGCGGGAACTAGCTGCCCCATTCCTCCGGGGACAAACTTCACGTACCATGTGCAGGTGAAGGACCAGATAGGCAGCTACTTCTACTACCCAAGCACAGCCATGCATAAGGCAGCTGGTGGATTTGGTGGCCTCCGTGTAAACAGTCGCTTGCTCATTCCTGTGCCATACCCTGATCCTGAGGATGACTACACCGTTCTCATCGGTGACTGGTACACAAAGAGCCACACCACTCTGAGGAAGCTCTTGGATAGTGGCCGCTCCATTGGCAGGGCCGAAGCCGTTCTCATCAACGGCAAAACAGCTAAAGGCGATGGAAAAGACGAGCCACTCTTCACCATGAAGCCTGGAAAGACCTACAAATACAGAATATGCAACGTTGGCCTTAAGGCCTCCCTAAACTTCAGAATCCAGAGCCATTCCATGAAGCTTGTCGAGATGGAAGGCTCCCACGTCGTGCAAAACAACTACGACTCTCTCGACGTCCATGTAGGAGGATGCTTCACTGTCCTCGTTACAGCGGACAAGGTGCCAAAGGATTACTACATGGTGGCTTCCACACGTTTCATCAAGAGCGTTCTAACATCTAAAGGCATCATCCGTTACGAAAATGCTAAGGCTCCTGCCTCACCCGACCTCCCTAAGGCTCCGCTTGGTTGGGCTTGGTCTGTCAACCAATTCCATTCCTTCCGATGGAACCTCAGCGCCAGTGCCGCCAGGCCCAACCCTCAGGGCTCCTACAAATATGGTAATATCAACATTACCCGTACTATCAAGCTCGTCAACTCAGCTATTAGGACAAAGGGTAAGCTCCGTTATGCCCTCAATGGTGTCTCCCACGTCGATCCCGAAACTCCGCTCAAGCTAGCTCAATACTTTGAAATTCCGGACAAGGTTTTCAAATATGATACTATCCCAGACATCGCACCTTCTGACGTTGCAGATTCTCTATCCGTACAGCCAAATGTTCTTAACATTACCCATCGCGACTTCGTCGAGATCATCTTTGAGAACCATGAAAAAACAATGCAATCCTATCACTTGGATGGTTATTCCTTCTTCGCACTAGCCATAGAGCCAGGCAGGTGGACCCCAGAAAGGAGGAAGGACTACAACCTTCTTGATGCCGTGAGCAGACACACAATTCAGGTCTTCCCAAAATGTTGGGCGGCCATCATGTTGACATTCGACAATGCTGGAATGTGGAACCTAAGATCTGAGCATGCTGAGAATCGCTACTTAGGGCAACAACTCTACATTAGCGTTTTGTCCCCTGAACGTTCCCTCAGGGACGAGTTAAACATGCCAGATATTCAACTTCTTTGCGGTCTTGTAAAGAATTTGCCAAAGCCAGCACCATACACATAA 1659 0.4864 MGRVMFVILLWLSAGTLLSVVRGEDPYLFFTFNVTYGTISPLGIPQQGILINGQFPGPNINCTSNNNLMINVFNNLDEPFLLTWHGIQQRKNCWQDGVAGTSCPIPPGTNFTYHVQVKDQIGSYFYYPSTAMHKAAGGFGGLRVNSRLLIPVPYPDPEDDYTVLIGDWYTKSHTTLRKLLDSGRSIGRAEAVLINGKTAKGDGKDEPLFTMKPGKTYKYRICNVGLKASLNFRIQSHSMKLVEMEGSHVVQNNYDSLDVHVGGCFTVLVTADKVPKDYYMVASTRFIKSVLTSKGIIRYENAKAPASPDLPKAPLGWAWSVNQFHSFRWNLSASAARPNPQGSYKYGNINITRTIKLVNSAIRTKGKLRYALNGVSHVDPETPLKLAQYFEIPDKVFKYDTIPDIAPSDVADSLSVQPNVLNITHRDFVEIIFENHEKTMQSYHLDGYSFFALAIEPGRWTPERRKDYNLLDAVSRHTIQVFPKCWAAIMLTFDNAGMWNLRSEHAENRYLGQQLYISVLSPERSLRDELNMPDIQLLCGLVKNLPKPAPYT 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00008 552 Pfam Multicopper oxidase 159 301 IPR001117 -
Cca01g00008 552 Gene3D - 21 146 IPR008972 -
Cca01g00008 552 CDD CuRO_2_AAO_like_1 159 299 IPR034271 -
Cca01g00008 552 SUPERFAMILY Cupredoxins 155 338 IPR008972 -
Cca01g00008 552 CDD CuRO_1_AAO_like_1 28 145 IPR034273 GO:0005507
Cca01g00008 552 SUPERFAMILY Cupredoxins 23 174 IPR008972 -
Cca01g00008 552 Pfam Multicopper oxidase 387 522 IPR011706 GO:0005507|GO:0016491
Cca01g00008 552 PANTHER L-ASCORBATE OXIDASE-LIKE PROTEIN 3 544 - -
Cca01g00008 552 SUPERFAMILY Cupredoxins 349 539 IPR008972 -
Cca01g00008 552 Pfam Multicopper oxidase 33 147 IPR011707 GO:0005507
Cca01g00008 552 Gene3D - 157 337 IPR008972 -
Cca01g00008 552 Gene3D - 347 544 IPR008972 -
Cca01g00008 552 PANTHER MULTI-COPPER OXIDASE 3 544 IPR045087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00008 Cca-Chr1 105311 107503 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00008 K00423 - gmx:100782413 967.607