Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00002 ATGTGGACAAATGTTTTCAAAATCGGAAGTCTGCATCAGATATCATGGTTTCAGTTTCTTCCTCATGAACCTGACCTGAACCCTCTACCTGACAAAAGTGTAAAAGTGGACCAAAAGGACGCTGCAATGTTTATGGTGCTTTCATCACATCTGCAACTTCAGAAGGAGGGATTTCTCAGCACATGGACCAATTCCTTTGTTGGACCTTGGGATCCATCCCAGGGTTTGCATAATCCAGACGAAAAGATAAAGTTGTGGCTTTTTCTTTCGGGGCGTCATTCATCAGTTGTTGAGACTGCTCAGCCAGCAGTATCTGGATTAAGAGTTGTTGCTTCTGGGCTTTGGTTGGCTCCTGGGGATTCAGAAGAGGTTGCAGCTGCTCTATCTCAGGCTTTGAGGAATCGTATAGAAAGAGCTTTGCATGGGCTTTATTACATGAGATTTGGAGATGTATTTTCAAAGTTTCATCAATTTCAAAGAGAAGAACTATTCAGAAGAGGACAGCCTGCAGTTGAGTTTGTCTTTGCTGCGACCGAGGAGGCAATCTTCATACATGTCATAGTGTCCTCAAAGCATATCCGGATGCTTTCCACGGGTGATTTGGAAAAAGTATTAAGACATTCTACAGAGTCAGCCTATGGACTTCCAGTGATTGTTTCTCTAATGCGTGGCAGCTTGACTGGTTGTTCACCTAGTGATCTGGTCAAACAAAGCTATTTCAGTTCTACCAAATATAGGGTGTCCAATGGAATTATAGGTCTCCCTAATCATGTTTCCCAGGGTGTTGGTTGCCAGCTGAGGGGGCAGAATTGTTATGTTGAAGTAAGTCTTGGCTCCCCTAGATCTGGAACTGACAACACATTTCAGCCAAACAAAATTAGTGTCAGGAATTTACCCAAACTTCATGTTGTTGAGTCTCCTATTATTGGACGAAGTGATCACAAGGGATCTCCAGATCATTTGTTGGATTATGAGAAAACATTTCTCTATCCAGCTGAGGCAGTGCTCGTGCCAATTTTGCAAACATCATTAGCAAGGTCTTCCTTGAGAAGATTTTGGCTGCAGAATTGGATGGGACCATCCCTGCCTGGTTCCTCTTCCTTTATTCACTGTGCTGGTAATATGGATTGTACTGAAGATCCTTGGACTGAAATCAATGGAACTCGCACGCAAAATAGTTATGAtagtagtagcaatagcaatagtagcagtattagtagCTTAAGTGCCAGCTCTAGTGATAGTGATTACAAGACTACAGGACCGAGTGAATTAGAGGCAGATGCTGATTCTTTAACGTGTAGACAGTCTATGGTATCTTCTGGTGATCAGTTGGAAAGTGATGGCCCCAAATTGGGCTCTAAGCGGTCTCGAACTGGAGTGACAGAGTTGTTAAGTACAGCTACAAACATCCCAGTGCAAGATGCTTACATGTCTGATTTTGTTTCCATGGAAGTGAACAATTCAGCCATTACAGGAGTAGGAAATGAACCAATTGGGTCTTACTGGGACTGGGATGATGATGATAGGGGCATGGAAATGGATATTCAAGCCCTTCTATCAGAGTTTGGTGATTTTGGTGATTTCTTCGAAAATGATGTTTTGCCTTTTGGAGAGCCCCCAGGAACTGCGGAATCTCAGGCACTAATTTTTTCTGCTCCGGATTGTGGAGATGTCAACAGCAGTCCAGGTGGTGTGATAGATGTTGTTTCAGATCAAATACTTTTGCCTGTTGGGTTTCCTTCCTTTGAGAGCTATAACCCCCCTCCTTCAGCAGCCATGGAGGAATGTCTTAACAAAAGTCAAGATAACTTGAATAACTCCATGTCTTCGGGTCCAACCAATCAAACTCAAATGTTGTATACGAGGGAGTTTGATCATATAATGAAAGCTGAAGCAATGATGACATTTGCTCCTGAATTTGGAGCTGTGGAGACCCCTACTTCTGAGTTGTCCACAACAATTTTCAGAAGCCCATATTTTCCAAAATCTCTAAAAGCAGAGAGTTCAAATTCAAGTTCAAACAATTACTTATACGGTGCAGCACCGCCCTCTTCTCCCTGCACTGAAGGATCAGAGGGGAAGAATGGAGTGGTTGTCAATACAAAAAAAGGTTCTGGAAAACATGATGCAAGTATGAGTCTCCACTCAAAAAATTGCTATACTTTTGTGGAGAGCCAGAAGGAAAAAAGTGATAAAAATCCTGTCACATGTAATGATAACAGCATTGCTAAATCTGAGGGGCTAGCGCCACTCTCAAACATTGGTTCTAATGCTATTGTTAAGTCTTCCCTAAGGAAGATGACTGAATGCACACATGAAGCAGAGCATCACCTTCTATCTGCAAAAACTTTGCTGGCAACTGATATTACATGTGTTATGTTGCAAGCTTCCATGTGCAGGTTACGCCATATTCTCTTATCTTCAACTAACCTAATGCCTATTGGTTTAAGTAGGTCCAATGGGGTTTCATTTTTGAATCAGCTTCCTAGCGACCCAAGTATCACCACAGAAAACATATCAGGCAAGTTTGATGTGAAGAAGAAAGAAAATATACCAATTAGAATTGCAGGTGATATTGATGGAGGAATGCTTGATGGTCACCTTAATGCTCCTATTGGTGTTTGGCGCACATTAGGAGCTTCAAAAGTTGTAAAACCTTCAAATTCACCTAACATGGAAGTTGGTCCTTCCTTTTCTCATAATTCTTTCAATGAAGAAGGTATCCTTTCTTACGGTCAAAGGAAACCACTTCAGGAGCTTCTTGACGGGATTGCATTGCTTGTCCAACAAGCTATTTCCTTTGTTGATCTGGCCTTGGATGCGGATTGTGGTGATGGTCCATATGGTCTGCTTGCACTGCAAGAACAATGGAGGCGTGGATTTTGTTGTGGGCCTTCCATGGTCCATGCTGGCTGTGGGGGAACTCTTGCCTCTTCTCATTCACTGGACATTGCTGGCTTGGAGTTAGTGGATCCACTTTCTGCAGATGTTCATGCATCCACTGTCATCAGTTTGCTACAGTCTGACATAAAAACAGCTTTGAAATCTGCTTTTCCCAACTTGGAAGGGCCATTAACTGTAACTGATTGGTGTAAAGGACGCAATCAATTGGTTGATACTGGAAGCATAGTTGACGGAGTTTCTGCTGAATCCAGTATAAATGAATGTAGGGATTCTTCAGAACCAATGAGTCCATCCCAGTCATCTGTTGGTGGATCATCCACTATTAAGGTTTCCAGCATGATGGATAGTGCTAAGGTGGATGAGACTTCTCAAAGGAGATCTGGTCAAGATTCATGCAGTACAGAGTCAGAGCAGCAACTATGTTCCCGGCTAAAACCTACTCTCATTGCTCTTCCGTTTCCTTCTATACTTGTAGGGTATCAGGATGATTGGCTCAAGACATCAGCGAACTCTTTGCAGCACTGGGAAAAGGCTCCTCTAGAGCCCTATGCTCTACAGAAGCCTGTTACGTACCATGTTGTATGTCCTGACATTGATCCCCTTACTTCTGCTGCTGCTGATTTTTTTCAACAACTTGGAACAGTTTATGAGACATGCAAGCTAGGTACTCATTCACCTCAAGCCTTGGGGAATCAGATGGAGATAGAGTCTGCAAAGTTGTCATCTTGTGGTTTTGTTCTACTTGATTGCCCCCAATCAATGAAGATTGAGAGCAGCAATACATCTCTAGTTGGTTCAGTAAGTGATTACTTTTTATCTTTATCTAATGGTTGGGACCTGGCTAGCTATCTCAAGTCTCTTTCAAAGGCACTTAGAGGGCTGAAAATTGGCTCTTGCTTTTCTACAAACCCTAGTGAAGGAAGTAACAGTTCATGCTTGGTTATCTATGTGGTGTGCCCGTTTCCTGATCCCACTGCAATTTTGCAAACTGTAATTGAATCTTCAGTTGCCATTGGATCGGTTGTCCAACAGTCAGATAGAGAGAGGAGATCTAGCTTGCATAGTCAGGTTGTGAAGGCATTAAGTGGCTTGGCTACTGTTGACGAAGCTTCAGCAGCTAATATCCTTGTGCTTTCTGGGTTTAGTATTCCAAAATTGGTCTTGCAGATAGTTACAGTGGATGCCATTTTCAGAGTCACAAGTCCATCTGTTAGTGAGCTTGTCATTTTAAAAGAGACTGCCTTTACTGTATACAGCAAGGCTCGTCGCATTTCACGTGGAATCTCTAGTGATTTTTCTCAATCAGCTTTTTCTAGTAGATCTCATTCTGTTTTGACACAAATGCCTTCTCCCATCTCTGGGATGTGGAAAGACTGTGTTGGCCCTCGAATGGCAGGACATTCTCTTCCTAGGGAGGGTGACATTGATGCTAGCTTGAGACCTGGTACTTGGGATAATTCTTGGCAATCAACAAGGACTGGGGGTTTAAACTGTGATCCAAGTAGAACTGGTGATATTTTTCTTCATGATGAAATTCGTTACATGTTTGAACCCCTTTTTATTCTTTCAGAATCAGGTTCTCCTGAAAATGGTATTTCAGTTATTGGTAGCCCCACTTCAGAATCTTCCAAGGCATTGACAGATGATAGTAGTGGTAGCTATTTACAGAATACGAGTACTGCTGGAAGTTTGGAGTCTGCTTCAAGCACTGATGGATCTGGGTCTGATCCAAAGACTCCTCCAAGCCTACATTGTTGCTATGGATGGACAGAGGACTGGCGTTGGCTTGTATGCATCTGGACAGATTCGAGAGGAGAATTGCTGGACTGCAATATTTTCCCCTTTGGTGGAATAAGCAGTAGGCAGGATACAAAGGGTCTGCAGTGCCTGTTTGTTCAAATTCTCCAGCAAGGTTGTCTAATACTTCAATCTTGTGATCCTGGCCTTGCAAAGCCTCGGGATTTTGTGATAGCACGCATTGGAGGGTTTTATGAGCTTGAGTACCTTGAGTGGCAGAAAGCCATTTATTCTGTTGGTGTGTCTGAGATGAAGAGGTGGCCTTTGCAATTGCGGAAATCTATGTCTGATGGGATGTCTGCAACTAGTAATGGTTCTTCTTTGCAACAACCAGATATGAGTTTGATCCCAGAAAGAACTCTTCCTTCCTCACCTAGTCCTTTGTACAGCCCTCATACCAAATCCACTGGTTTTATGAAAGGCGGTTTGGGGCAACCTGCTGCAAGAAAGCAGCTTATGGGTGGACATTCTGTGGTTGACAATTCAAGGGGTTTGCTTCATTGGGCCCAGAGCATTAGTTTTGTTGCAGTTTCCATGGATCACACGTTACAACTAGTTCTCCAAGCAGATTCGTCTACTCCTGGTTACATAGAAGGTTTCACTCCAGTGAAGTCTCTTGGTTCTACGTCTTCTGCATATATTCTAATTCCTTCTCCCAGCATGCGGTTCCTTCCTCCAACAGGTCTTCAACTCCCCACATGCCTCACAGCAGAGTCGCCACCGCTAGCTCATCTGCTTCACAGCAAGGGTTCTGCTCTTCCTCTTTCTACTGGATTTGTGGTTTCAAAAGCAGTACCTTCTATGAGGAAGGACTATAGAAGCAACCTGAAAGAAGAATGGCCCTCTATACTTTCTGTGAGCCTCATTGATTATTATGGAGGTGCTAACATCCCCCAAGAGAAGATTGTCCGGGGAGTTAACAAGCAAGGTGGTAGAAGTTTAAACTGGGAAGCCAAAGATTTTGAAATTGAGACCCACTTGGTTCTGGAGTCTCTTGCAGCAGAGCTTCATGCCTTGTCATGGATGACAGTGAGCCCCACATACCTAGAGCGGCGAACAGCACTTCCCTTCCACTGTGACATGGTTCTAAGACTAAGAAGACTTCTTCATTTTGCTGATAAAGAGCTCTCCAAGCAGTCTGAGAAATCTTGA 5856 0.4303 MWTNVFKIGSLHQISWFQFLPHEPDLNPLPDKSVKVDQKDAAMFMVLSSHLQLQKEGFLSTWTNSFVGPWDPSQGLHNPDEKIKLWLFLSGRHSSVVETAQPAVSGLRVVASGLWLAPGDSEEVAAALSQALRNRIERALHGLYYMRFGDVFSKFHQFQREELFRRGQPAVEFVFAATEEAIFIHVIVSSKHIRMLSTGDLEKVLRHSTESAYGLPVIVSLMRGSLTGCSPSDLVKQSYFSSTKYRVSNGIIGLPNHVSQGVGCQLRGQNCYVEVSLGSPRSGTDNTFQPNKISVRNLPKLHVVESPIIGRSDHKGSPDHLLDYEKTFLYPAEAVLVPILQTSLARSSLRRFWLQNWMGPSLPGSSSFIHCAGNMDCTEDPWTEINGTRTQNSYDSSSNSNSSSISSLSASSSDSDYKTTGPSELEADADSLTCRQSMVSSGDQLESDGPKLGSKRSRTGVTELLSTATNIPVQDAYMSDFVSMEVNNSAITGVGNEPIGSYWDWDDDDRGMEMDIQALLSEFGDFGDFFENDVLPFGEPPGTAESQALIFSAPDCGDVNSSPGGVIDVVSDQILLPVGFPSFESYNPPPSAAMEECLNKSQDNLNNSMSSGPTNQTQMLYTREFDHIMKAEAMMTFAPEFGAVETPTSELSTTIFRSPYFPKSLKAESSNSSSNNYLYGAAPPSSPCTEGSEGKNGVVVNTKKGSGKHDASMSLHSKNCYTFVESQKEKSDKNPVTCNDNSIAKSEGLAPLSNIGSNAIVKSSLRKMTECTHEAEHHLLSAKTLLATDITCVMLQASMCRLRHILLSSTNLMPIGLSRSNGVSFLNQLPSDPSITTENISGKFDVKKKENIPIRIAGDIDGGMLDGHLNAPIGVWRTLGASKVVKPSNSPNMEVGPSFSHNSFNEEGILSYGQRKPLQELLDGIALLVQQAISFVDLALDADCGDGPYGLLALQEQWRRGFCCGPSMVHAGCGGTLASSHSLDIAGLELVDPLSADVHASTVISLLQSDIKTALKSAFPNLEGPLTVTDWCKGRNQLVDTGSIVDGVSAESSINECRDSSEPMSPSQSSVGGSSTIKVSSMMDSAKVDETSQRRSGQDSCSTESEQQLCSRLKPTLIALPFPSILVGYQDDWLKTSANSLQHWEKAPLEPYALQKPVTYHVVCPDIDPLTSAAADFFQQLGTVYETCKLGTHSPQALGNQMEIESAKLSSCGFVLLDCPQSMKIESSNTSLVGSVSDYFLSLSNGWDLASYLKSLSKALRGLKIGSCFSTNPSEGSNSSCLVIYVVCPFPDPTAILQTVIESSVAIGSVVQQSDRERRSSLHSQVVKALSGLATVDEASAANILVLSGFSIPKLVLQIVTVDAIFRVTSPSVSELVILKETAFTVYSKARRISRGISSDFSQSAFSSRSHSVLTQMPSPISGMWKDCVGPRMAGHSLPREGDIDASLRPGTWDNSWQSTRTGGLNCDPSRTGDIFLHDEIRYMFEPLFILSESGSPENGISVIGSPTSESSKALTDDSSGSYLQNTSTAGSLESASSTDGSGSDPKTPPSLHCCYGWTEDWRWLVCIWTDSRGELLDCNIFPFGGISSRQDTKGLQCLFVQILQQGCLILQSCDPGLAKPRDFVIARIGGFYELEYLEWQKAIYSVGVSEMKRWPLQLRKSMSDGMSATSNGSSLQQPDMSLIPERTLPSSPSPLYSPHTKSTGFMKGGLGQPAARKQLMGGHSVVDNSRGLLHWAQSISFVAVSMDHTLQLVLQADSSTPGYIEGFTPVKSLGSTSSAYILIPSPSMRFLPPTGLQLPTCLTAESPPLAHLLHSKGSALPLSTGFVVSKAVPSMRKDYRSNLKEEWPSILSVSLIDYYGGANIPQEKIVRGVNKQGGRSLNWEAKDFEIETHLVLESLAAELHALSWMTVSPTYLERRTALPFHCDMVLRLRRLLHFADKELSKQSEKS 1951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00002 1951 MobiDBLite consensus disorder prediction 682 712 - -
Cca01g00002 1951 Pfam Mediator complex subunit 13 C-terminal domain 1551 1930 IPR009401 GO:0003712|GO:0006357|GO:0016592
Cca01g00002 1951 MobiDBLite consensus disorder prediction 1501 1546 - -
Cca01g00002 1951 PANTHER RAG1-ACTIVATING PROTEIN 1 1 1944 - -
Cca01g00002 1951 MobiDBLite consensus disorder prediction 1055 1103 - -
Cca01g00002 1951 MobiDBLite consensus disorder prediction 382 420 - -
Cca01g00002 1951 MobiDBLite consensus disorder prediction 1055 1087 - -
Cca01g00002 1951 Pfam Mediator complex subunit 13 N-terminal 2 338 IPR021643 -
Cca01g00002 1951 MobiDBLite consensus disorder prediction 382 458 - -
Cca01g00002 1951 MobiDBLite consensus disorder prediction 1501 1549 - -
Cca01g00002 1951 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 13 1 1944 - -
Cca01g00002 1951 Pfam MID domain of medPIWI 1156 1271 IPR041285 -
Cca01g00002 1951 Pfam MID domain of medPIWI 1266 1392 IPR041285 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00002 Cca-Chr1 27150 53759 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00002 K15164 - gmx:100782017 3527.64