Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01732 ATGAATCGCCAGAAATCTATACTCTCATTCTTCCAAAAGACCTCGCCGGAAAATCGCACTTCCGGCGCTAAGCGAGACTCTGTTCCGTCGGTTCAACAAGCCAACCGTAACGACCGTACTGTCAAACCAGTCTTCAATCCACCACCGTCGGCAGATGACGTCAGAGGAACAGACACGCCGCCGGAGAAGGTGCCTCGTCAGGTTTTGCCGGCGAACTTTGCTCCAAACGCGAACAACTTCGGTTCGTCTCTGTTTGAGAGTATCATGCATAAATTCATTAAGGTCGATGATGGCGAAAAAGTTAACCAGAGGAGCCAGTCATCAAACCATGATAGCTTCCCCAAATCGTCTTCATCATCAACTATATTTAATAATACTAACCGCAAAGGACAGAAGAAAGAAGCAGCAGCTGCAGCTTTTGAACCTGTCGTGAAAGCAAAAGATAATGCTGTAAATTTCAAAGAAAAGGTTAACCATGAAAACATGTTCCTTGTTGAAAATGACGGTGATCTTACTGGACCAGAAACCCCAGGGATGCAGCCTCTTGTTTCTCATGTAAAGCGAAGTCGAGAGGATGGATCCAATCTTTCTTCCTTGCGGGATTCTGGCAAGCGAGTCAGATTTCTCAAGGATTCAATGGCACTGGACATGACAAAAAAGGAGTTAGAAGTGGCTAGCAAGTTTGAGTGGCTTGATCCTTCTCGAGTTAGGGATGCAAATGGAAGAAGGCCCAGTGATCCTTTATATGACAAGACGACACTTTATATACCTCCAGAGATTTTAAGAAAAATGACAGCATCACAGAAACAGTATTGGAGTGTCAAATGCAAATATATGGATGTTGTGCTATTCTTTAAAGTGGGAAAATTTTACGAGCTGTATGAAATGGATGCTGAAATTGGCCATAAGGAGCTTGATTGGAAAATAACATTAAGTGGTGTGGGAAAATGTCGGCAGGTTGGTATATCTGAAGGTGGGATTGATGATGCTGTTCAAAACCTGGTTGCTCGTGGATATAAGGTTGGGCGAGTGGAGCAATTGGAGACATCTGAAGAAGCAAAAGCTAGAGGAGCTAACTCTGTTATTCTAAGAAAGTTAGTTCAGGTAGTCACCCCATCAACCAATGTGGATGGTAATATTGGTCCTGAAGCAAATCATCTTCTTGCAATAAAAGAGGAAAGCAATGGCTCGGATAATGGTTCAGTTACATATGGATTTGCTTTTGTTGATTGTGCTCGTCTTAGGTTTTGGGTTGGTTCTATTGATGACGACGCGTCCTGTTCTGCTTTGGGGGCTTTATTGATGCAAGTGTCACCCAAGGAAATTATATATGAAAGCAGAGGGGTGTCCAAAGAAGCTCAGAAAGCATTTAGAAAATTCTCTTTAAACGGTTCGACAACCCTAAAATTGACTTCAATGCAGTCGATCACCGACTTGGTGAGCTCAGAAATTAGTGATTTAATTCGTTCGAAGGGATACTTTAAGGGGTCATCTAATTCACTGGATCAAGTGCTGACCAAAGTGATTCATCGTGAAATCACTTTGTCTGCTCTTGGTGGACTGATAGGTCATCTAGATAGATTGATGCTAAATGAGATTCTACAGAACGGGGACATATATCCATACCAGGTTTATAAGGGTTGCCTCAAAATGGATGGTCCAACATATGTTAATCTAGAAATCTTTGGTAATAGCGATGATGGTGGAAAATCAGGTACATTGTACAAGTATCTTGATAACTGTGTTACTTCATCTGGAAAGCGGCTTCTTAGGAACTGGATCTGCTGTCCACTAAAAGATGCTGAAGGAATTAACAACAGGCTTGATGTGGTAGATAATCTAATAACTTGCCCTGAAATTGTGTCTCATATTGCACAACATCTTCGCAAGCTTCCAGATTTGGAACTATTGCTCGGCCGAACCAAGTCCAGCCTTCAAGTATCAAGCCCTATCTTACTGCCCTTATTGGCAAAGAAAATATTGAAGCAGAGGGTGAAAGTGTTTGGGTCACTTGTGAAAGGCCTTCGGACTGCTTTGGGTTTGTTGCTTCTACTACAGAAAGAGCAGCTTCTAATATCATCCTTGACCAAGGTTTTTAAACTTCCAATTCTGACTGGCAGTGACGGGCTTGATCAATTTCTTACTCAGTTTGTAGCAGCTGTAGATAGTGACTTCCCAAATTACCAAAATCACGATGTTACGGATTCAGATGCCGAAACACTCACAATACTTGCTGAATTATTTTTGGAGAAAGCTGCCCAATGGTTTGAAGTTGTTCACGCCATCAATTGCATTGATGTACTAAGATCCTTTGCTGTTACTTCTAGCTTTTCATGTGGTACTATGTCTAGGCCTATCATAGTTCCTACATCAAAATGTACAAGTAAAGATAGTGGAATGCCTGTGCTCAAAATGAAGGGACTATGGCATCCATTTGCCCTTGGAGAGAGTGGACGTGTGCCTGTTCCAAATGACATGATCCTTGGTGAGAATGAAGACGGGCATCATCCTCGCACGTTGCTTTTAACAGGGCCAAACATGGGTGGAAAATCAACACTTTTGCGTGCTACCTGTGTAGCTGTTATTATGGCTCAGTTAGGCTGCTATGTGCCATGCGAAAATTGTGTTCTCTCAGTTGTGGATATCATCTTCACACGCCTTGGAGCCACAGATAGAATCATGGCAGGCGAGAGTACCTTTTTTATTGAGTGTACTGAAACTGCATCGGTGCTTCAGCATGCTACTCAAGATTCTCTTGTTATCCTTGATGAATTGGGTCGGGGAACAAGCACTTTTGATGGCTATGCCATTGCATATGCTGTATTCCGGCATCTGATTGAAAAGGTTAACTGTCGCTTGCTATTTGCGACACATTACCATCCGCTAACAAAAGAGTTTGCCTGTCATCCACGCGTTACAATGCAACACATGGCTTGTGCTTTCAACTCAAAATCTGATACCTTTTCCAAAAGTGATCAGGAGTTAGTTTTCCTATATCGGCTTGCCTCTGGAGCATGTCCTGAGAGCTACGGATTGCAGGTTGCCCTCATGGCTGGAATCCCAGAGAAAACTGTAAACATTGCTTCAAAAGCTAGCCAACAGATGAAAAAATCAATTGGAAAAAGCTTTAGGTCAAGTGAACAGAGATCAGAGTTTTCAACTCTTCATGAAGAATGGTTGAAGACATTGATGTCTATCTCACGAATTGAGGATTGTGAATCTTTTGATGATGATGTTTTAGATACATTAGTATGTTTGCGGTATGAACTAAAAACTTCGTTTAAATCAGGCAACTAG 3297 0.4213 MNRQKSILSFFQKTSPENRTSGAKRDSVPSVQQANRNDRTVKPVFNPPPSADDVRGTDTPPEKVPRQVLPANFAPNANNFGSSLFESIMHKFIKVDDGEKVNQRSQSSNHDSFPKSSSSSTIFNNTNRKGQKKEAAAAAFEPVVKAKDNAVNFKEKVNHENMFLVENDGDLTGPETPGMQPLVSHVKRSREDGSNLSSLRDSGKRVRFLKDSMALDMTKKELEVASKFEWLDPSRVRDANGRRPSDPLYDKTTLYIPPEILRKMTASQKQYWSVKCKYMDVVLFFKVGKFYELYEMDAEIGHKELDWKITLSGVGKCRQVGISEGGIDDAVQNLVARGYKVGRVEQLETSEEAKARGANSVILRKLVQVVTPSTNVDGNIGPEANHLLAIKEESNGSDNGSVTYGFAFVDCARLRFWVGSIDDDASCSALGALLMQVSPKEIIYESRGVSKEAQKAFRKFSLNGSTTLKLTSMQSITDLVSSEISDLIRSKGYFKGSSNSLDQVLTKVIHREITLSALGGLIGHLDRLMLNEILQNGDIYPYQVYKGCLKMDGPTYVNLEIFGNSDDGGKSGTLYKYLDNCVTSSGKRLLRNWICCPLKDAEGINNRLDVVDNLITCPEIVSHIAQHLRKLPDLELLLGRTKSSLQVSSPILLPLLAKKILKQRVKVFGSLVKGLRTALGLLLLLQKEQLLISSLTKVFKLPILTGSDGLDQFLTQFVAAVDSDFPNYQNHDVTDSDAETLTILAELFLEKAAQWFEVVHAINCIDVLRSFAVTSSFSCGTMSRPIIVPTSKCTSKDSGMPVLKMKGLWHPFALGESGRVPVPNDMILGENEDGHHPRTLLLTGPNMGGKSTLLRATCVAVIMAQLGCYVPCENCVLSVVDIIFTRLGATDRIMAGESTFFIECTETASVLQHATQDSLVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCRLLFATHYHPLTKEFACHPRVTMQHMACAFNSKSDTFSKSDQELVFLYRLASGACPESYGLQVALMAGIPEKTVNIASKASQQMKKSIGKSFRSSEQRSEFSTLHEEWLKTLMSISRIEDCESFDDDVLDTLVCLRYELKTSFKSGN 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01732 1098 MobiDBLite consensus disorder prediction 1 40 - -
Car08g01732 1098 CDD ABC_MSH6_euk 804 1028 - -
Car08g01732 1098 ProSitePatterns DNA mismatch repair proteins mutS family signature. 918 934 IPR000432 GO:0005524|GO:0006298|GO:0030983
Car08g01732 1098 Pfam MutS domain I 266 377 IPR007695 GO:0005524|GO:0006298|GO:0030983
Car08g01732 1098 Gene3D DNA repair protein MutS, domain I 223 382 IPR016151 GO:0005524|GO:0006298|GO:0030983
Car08g01732 1098 MobiDBLite consensus disorder prediction 99 130 - -
Car08g01732 1098 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 801 1037 IPR027417 -
Car08g01732 1098 PIRSF Msh6 87 728 IPR017261 GO:0006298|GO:0030983
Car08g01732 1098 PIRSF Msh6 727 1079 IPR017261 GO:0006298|GO:0030983
Car08g01732 1098 SMART mutATP5 837 1033 IPR000432 GO:0005524|GO:0006298|GO:0030983
Car08g01732 1098 SMART DNAend 569 816 IPR007696 GO:0005524|GO:0006298|GO:0030983
Car08g01732 1098 MobiDBLite consensus disorder prediction 105 130 - -
Car08g01732 1098 PANTHER DNA MISMATCH REPAIR PROTEIN MSH7 249 1090 - -
Car08g01732 1098 Pfam MutS domain V 841 1035 IPR000432 GO:0005524|GO:0006298|GO:0030983
Car08g01732 1098 Gene3D MutS, connector domain 384 550 IPR036678 GO:0005524|GO:0006298|GO:0030983
Car08g01732 1098 Gene3D - 783 1043 IPR027417 -
Car08g01732 1098 Pfam MutS domain II 385 531 IPR007860 GO:0005524|GO:0006298|GO:0030983
Car08g01732 1098 SUPERFAMILY DNA repair protein MutS, domain II 383 564 IPR036678 GO:0005524|GO:0006298|GO:0030983
Car08g01732 1098 Gene3D - 551 778 - -
Car08g01732 1098 Pfam MutS domain III 555 772 IPR007696 GO:0005524|GO:0006298|GO:0030983
Car08g01732 1098 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 249 1090 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Car08g01732 1098 MobiDBLite consensus disorder prediction 1 66 - -
Car08g01732 1098 SUPERFAMILY DNA repair protein MutS, domain I 253 374 IPR016151 GO:0005524|GO:0006298|GO:0030983
Car08g01732 1098 SUPERFAMILY DNA repair protein MutS, domain III 552 776 IPR036187 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01732 Car-Chr8 27175592 27184612 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01732 K08737 - gmx:100818859 1676.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01732 08 27175592 27184612 Car08g01732 08 27175592 27184612 ECH