Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01709 ATGGAAGATGATAAAGAATCACAATCACAAACACCACAACTCAAAAGTGTTGTTATAATTTCAATTCCACCTTCAAATAACCCTTCTTTAGGCAAAAAAATCACTGCTTTTACTTTCTCTAACAACCCTTTTTCTCCTCAACAACAACCTCAAAACAATGTTCCTCCAATGTCTCCAATCCAATCCTACCCATCAAATCATCAACTTCAATTTTCATCCACAAGAAGATTTTTTCACACCACCCAAATAAAGTTTTTCACTTTCTTTGGTATTTTTCTCTTTGCCCTTTTTCTCTATGGTTCTCTTTTCTCAACTATAACAACAACCCTTgaactaagtgaactcaagaatcatcatcatgatggtggtgatgatgaatctgaTGAACCTAGTTCCTTTTTATTTCCTCTGTTTAAGAAATATGGTGTTGTTGGACAGAGGGATTTGAAGCTTATTGATGTTAAAAAAGGGAACTTTGTGACACAAAAAAGTGGTGATAGTGATGGTATTGCTTTTAGTTCTAGGGTTGTAGCTGTTGATTCATCATCATCCACCGTTTTTCCAATCAGTGGCAATGTTTATCCAGATGGGTTGTATTACACACATGTACGCGTTGGAAACCCTCCTAAGCGTTATTTTGTTGATGTGGATACAGGGAGTGACTTAACTTGGATTCAGTGTGATGCTCCATGTAGAAGTTGTGCTAAGGGAGCAAATGTGCCGTACAAGCCAATAAGAACAAATATAGTGCCATCTTTAGACTCTCTATGCTTGGAAGTTCAGAAGAATCAAAAGAATGGATATCATGAAAGTTTCCAACAGTGTGACTATGAAATTCAATATGCAGATCATAGTTCTTCCATGGGGGTTCTTATTAGAGACGAGCTTCATCTTATGACTACTAATGGATCCAAAACCAAGTTAAATTTTGTTTTCGGGTGTGGATATGATCAAGAGGGTTTGCTTTTGAACACATTGACAAAAACAGATGGAATCATGGGACTGAGTAGGGCAAAAGTTGGATTACCTTATCAGTTGTCAAGTAAAGGGATTATTAAGAATGTGGTTGGTCATTGCTTAAGCAATAATGATGGAGTTGGTGGTGGATACATGTTCTTAGGTGATGATTTTGTGCCTTATTGGGGCATGACTTGGGCTCCTATGACTCAGATTACAGATTTATACCAAACTGAGGTTCTTGGAATAAATTACGGTAATCGACTACTCAGTTTTGATGGACACAGCAAAGTAGGAAATGTGGTTTTTGATAGTGGCAGTTCTTATACGTATTTTCCAAAAGAGGCGTACCGTGATCTTGTTGCTTCTCTTGAAGAAGTTTCTGGGCTAGGTCTCGTTGAAGATGATTCAGATACAACTTTGCCAATTTGCTGGCAAGCTAATTTCCCAATCAGATCTGTCAAAGACGTCAAGGATTACTTCAAGACCTTAACTCTTCGATTCGGAAACAAATGGTGGATTTTGTCGACATTGTTTCATATACCGCCGGAGGGTTACTTGATCATTAGTAACAAAGGCAATGTGTGCTTAGCTATCCTTGATGGTAGCAATGTAAATGATGGATCCTCAATTATACTTGGAGACATTTCATTGCGAGGATATTTGGTTGTGTATGACAATGTGAACAAGAATATTGGTTGGGAGAGAACTAAATGTGGCATGCCAAACAGAATATTGAAAAAGAATTACAATTTCTTCAGTGATAATATGCTATGA 1734 0.3622 MEDDKESQSQTPQLKSVVIISIPPSNNPSLGKKITAFTFSNNPFSPQQQPQNNVPPMSPIQSYPSNHQLQFSSTRRFFHTTQIKFFTFFGIFLFALFLYGSLFSTITTTLELSELKNHHHDGGDDESDEPSSFLFPLFKKYGVVGQRDLKLIDVKKGNFVTQKSGDSDGIAFSSRVVAVDSSSSTVFPISGNVYPDGLYYTHVRVGNPPKRYFVDVDTGSDLTWIQCDAPCRSCAKGANVPYKPIRTNIVPSLDSLCLEVQKNQKNGYHESFQQCDYEIQYADHSSSMGVLIRDELHLMTTNGSKTKLNFVFGCGYDQEGLLLNTLTKTDGIMGLSRAKVGLPYQLSSKGIIKNVVGHCLSNNDGVGGGYMFLGDDFVPYWGMTWAPMTQITDLYQTEVLGINYGNRLLSFDGHSKVGNVVFDSGSSYTYFPKEAYRDLVASLEEVSGLGLVEDDSDTTLPICWQANFPIRSVKDVKDYFKTLTLRFGNKWWILSTLFHIPPEGYLIISNKGNVCLAILDGSNVNDGSSIILGDISLRGYLVVYDNVNKNIGWERTKCGMPNRILKKNYNFFSDNML 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01709 577 Pfam Xylanase inhibitor C-terminal 407 554 IPR032799 -
Car08g01709 577 Pfam Xylanase inhibitor N-terminal 199 375 IPR032861 -
Car08g01709 577 ProSiteProfiles Peptidase family A1 domain profile. 199 554 IPR033121 -
Car08g01709 577 PANTHER ASPARTYL PROTEASES 21 562 IPR001461 GO:0004190|GO:0006508
Car08g01709 577 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 214 225 IPR001969 GO:0004190|GO:0006508
Car08g01709 577 Gene3D Acid Proteases 382 560 IPR021109 -
Car08g01709 577 Gene3D Acid Proteases 174 375 IPR021109 -
Car08g01709 577 PANTHER ASPARTYL PROTEASE APCB1 21 562 - -
Car08g01709 577 SUPERFAMILY Acid proteases 191 558 IPR021109 -
Car08g01709 577 PRINTS Pepsin (A1) aspartic protease family signature 205 225 IPR001461 GO:0004190|GO:0006508
Car08g01709 577 PRINTS Pepsin (A1) aspartic protease family signature 420 431 IPR001461 GO:0004190|GO:0006508
Car08g01709 577 PRINTS Pepsin (A1) aspartic protease family signature 530 545 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01709 Car-Chr8 26929259 26934240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01709 182 558 Miscellaneous Gene Families AT1G77480 46.214 7.11e-108 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01709 - - cam:101497154 1124.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01709 08 26929259 26934240 Car08g01709 08 26929259 26934240 ECH