Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01644 ATGAAAATAAGGAGAAAGGAGATTATTAAAGAAGCAAAGAAGCAACTATGGATGTCAGGGCCAATGATATTTGTCTGTTTGTTTCAAAATAGCTTATTACTTATATCTCTCATGTTTGTTGGACATTTGGATCGTGAATTAGTTCTTGCTGGTGCTTCTTTAGCTACTTCATTTCTCAATGTCAGTGGTTTCAatgttatgATGGGTTTGTCAAGTGTACTAGACACATTTTGTGGTCAAGTTTATGGAGCACAACAATATCATATGGTTGGAATATATACACAAAGAGCCATGTTGGTTACAACCCTATTGAGTATACCCTTATCAATTATTTGGGCATACTTAGAACCCATTTTGATTATTCTACATCAAAACAAAGCTATTGCAGCACAAGCTCAAATATATGCTCGTTACTCTATTCCAAGCCTTTGTGCCAATGGATTTCTTAGGTGCATTATTAAATTCCTACAAACCCAAAACATAGTTTATCCTATGATGTTGGCTACTGGATTCACTAGCATAATACATGTTGTTCTATGTTGGGCTTTAGTTATGAAAATTGGGCTTGGTCTCAAAGGTGCTGCTATTGCAATTTGTATATCAAATTGGTTTAATGTGATACTATTGGTAATTTATATCAAGTTATCACCTTCATGTAAAAGGACTTGGGTTGGTTTATCAAGAGAATCCTTGCACAACATTCCTCCATTTCTCAAACTTGCTTTTCCTTCAACGATCATGGTTTGCTTAGAATCATGGACATTTGAATTAATGGTACTCTTGTCTGGTGCTCTTTCAAATCCAAAATTGCAAACATCTGTGCTTTCTATATGTATTAATACAAGTGTTTTGGTATGGAATATACCATTTGGAATTAGTCTTGTTGGAAGTACAAGAATCTCAAATGAATTAGGAGCTGGACGTCCAAATGGTGCATATTTAGCTGCTATAGTCACCTTATTCATGGCATTCACTTCTGGAGTTTTAGAGTTTGCTTTTATTATGTCAGTATGGAAAGTTTGGGGAAAGGCTTTTAGCAATGTTGATCAAGTAGTCACATATGTGACTTCCATGACACCATTGGTTGCAACCTCTGCCTTTGTAGATTCAATTCAAACAGTACTTACAGGTGTTTCTAGAGGATGTGGTCGACAAAAACTTGGAGCATTTGTTAATTTGGGATCTTTTTATCTTGTGGGAGTTCCTTTGTCTGCTATATTTGCTTTTGTCATCCACATGAATGGTCAAGGCCTCCTTTTAGGTCTTATAATAGCACTTGTTGTTGTAGTGGTGTGTTTACTTATCATCACCTTGCACACTAATTGGGAGAAAGAAACAAATAAGGCAGCAAAAAGAGTAGGAGAAGGCAATGGAGTCCAAATTAATGCACTTTCACTTGACCAAAGTGTTACAATTTTATGA 1422 0.3558 MKIRRKEIIKEAKKQLWMSGPMIFVCLFQNSLLLISLMFVGHLDRELVLAGASLATSFLNVSGFNVMMGLSSVLDTFCGQVYGAQQYHMVGIYTQRAMLVTTLLSIPLSIIWAYLEPILIILHQNKAIAAQAQIYARYSIPSLCANGFLRCIIKFLQTQNIVYPMMLATGFTSIIHVVLCWALVMKIGLGLKGAAIAICISNWFNVILLVIYIKLSPSCKRTWVGLSRESLHNIPPFLKLAFPSTIMVCLESWTFELMVLLSGALSNPKLQTSVLSICINTSVLVWNIPFGISLVGSTRISNELGAGRPNGAYLAAIVTLFMAFTSGVLEFAFIMSVWKVWGKAFSNVDQVVTYVTSMTPLVATSAFVDSIQTVLTGVSRGCGRQKLGAFVNLGSFYLVGVPLSAIFAFVIHMNGQGLLLGLIIALVVVVVCLLIITLHTNWEKETNKAAKRVGEGNGVQINALSLDQSVTIL 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01644 473 CDD MATE_eukaryotic 11 448 IPR045069 GO:0042910|GO:1990961
Car08g01644 473 PANTHER PROTEIN DETOXIFICATION 3 453 - -
Car08g01644 473 PANTHER MULTIDRUG RESISTANCE PROTEIN 3 453 - -
Car08g01644 473 Pfam MatE 21 181 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Car08g01644 473 Pfam MatE 243 405 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Car08g01644 473 TIGRFAM matE: MATE efflux family protein 21 418 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01644 Car-Chr8 26266393 26272570 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01644 K03327 - gmx:100816863 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01644 08 26266393 26272570 Car08g01644 08 26266393 26272570 ECH