Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00643 ATGGGGTCTCATCTTTTCCTTCTATTTTCATCATCAATCATCTTCGCTTCAGGAATATTATTTCTCACAGCTGAATCAAAAACACATTGGGGTGACATAAAAGTTCTAAAGGAACTAAAACAAAAACTAAACCCTGATTCCGTGTATCCAGGTTCATGCGTTTCCACCTGGGACTTCAATCACGACCCTTGCGATAATCTCTTCAGCGAAAAATTCACTTGCGGTTTCAGATGCGACGTCGTCGTTTCCAAACTGAGTCGACTCACCGAACTCAGTCTCGACCAAGCTGGTTACTCTGGCTCACTCTCCACCATCACTTTTAACCTTCCTTATCTCGAAACTCTCGATTTTTCAAACAACTTCTTCACCGGTAACTTTCCCGAATCACTTTCAAACTTAACTCGTCTGAGTCGACTCAGTCTATCGACAAACTCGTTCACCGGTGAAATTCCCTTTTCCTTCGGAACTTCCCTTTCCAACCTCCAAGAGTTGTATCTCGATAACAACAATCTTCAAGGAACAATTCCTTCGAGTTTCAACAATCTTCAAAGATTAACAAGACTTGAACTTCAAAACAATAAATTTTACGGAAATGTCCCTGATTTGGGTTATTTGAAAAACCTTTACTACATGGATCTAAGCAACAATGGATTCTCCGGTGTACCGTTTTCATTACCGGTTTCTTTAGTTCAGATTTCAATAAGGAACAACAATTTAAACGGTTCTTTATCCTCTGAAAGCTTCAAGAATTTGATGTATCTACAAGTAGTTGATTTGAGTTCAAACAAAATCAGTGGAAATGCTCCTTCGATTTTCTTCGAGCTTCCATCGTTGCAACAGTTAACACTTTCATACAACGAATTTTCTTCCATTGAAGTTCCATCTTACGGAACAGAATCGCTGAGCGAGCTTATAGCTGTTGATTTAAGCAACAACAAGCTTCAAGGTGTTTTACCTTTGTTTTTGGCTATGATGCCAAAGCTTTCGTCTTTGTCTTTGGAGAATAACCGGTTCACCGGTTTGATTCCGGTTCAGTTTGCATTGAAAACGGTTTATCCGGAAATTGGGATTGCCCCGTTTGGTAGGCTTTTGTTAGGGGGTAATTATTTGTTTGGAGGGATACCTCGTCCTTTGTTGGTTCTTAAACAAGATTATGCTAATGTGAGTTTAGTTGATAATTGTTTGTATAGGTGTCCTCATAGATTCTTTTTTTGTCAAGGTGGACAACAGAAATCATCATCACAATGTTTCAATGTAATTATCCCTTAG 1269 0.3901 MGSHLFLLFSSSIIFASGILFLTAESKTHWGDIKVLKELKQKLNPDSVYPGSCVSTWDFNHDPCDNLFSEKFTCGFRCDVVVSKLSRLTELSLDQAGYSGSLSTITFNLPYLETLDFSNNFFTGNFPESLSNLTRLSRLSLSTNSFTGEIPFSFGTSLSNLQELYLDNNNLQGTIPSSFNNLQRLTRLELQNNKFYGNVPDLGYLKNLYYMDLSNNGFSGVPFSLPVSLVQISIRNNNLNGSLSSESFKNLMYLQVVDLSSNKISGNAPSIFFELPSLQQLTLSYNEFSSIEVPSYGTESLSELIAVDLSNNKLQGVLPLFLAMMPKLSSLSLENNRFTGLIPVQFALKTVYPEIGIAPFGRLLLGGNYLFGGIPRPLLVLKQDYANVSLVDNCLYRCPHRFFFCQGGQQKSSSQCFNVIIP 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00643 422 Pfam Leucine rich repeat 229 287 IPR001611 GO:0005515
Car08g00643 422 Pfam Leucine rich repeat 159 217 IPR001611 GO:0005515
Car08g00643 422 Gene3D Ribonuclease Inhibitor 200 415 IPR032675 -
Car08g00643 422 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 9 417 - -
Car08g00643 422 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 9 417 - -
Car08g00643 422 SUPERFAMILY L domain-like 83 349 - -
Car08g00643 422 SMART LRR_typ_2 325 348 IPR003591 -
Car08g00643 422 SMART LRR_typ_2 205 228 IPR003591 -
Car08g00643 422 SMART LRR_typ_2 275 298 IPR003591 -
Car08g00643 422 SMART LRR_typ_2 158 181 IPR003591 -
Car08g00643 422 SMART LRR_typ_2 301 324 IPR003591 -
Car08g00643 422 Gene3D Ribonuclease Inhibitor 31 199 IPR032675 -
Car08g00643 422 Pfam Leucine Rich Repeat 112 133 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00643 Car-Chr8 5491231 5492757 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00643 44 392 Receptor kinase-like Gene Family AT3G11080 33.062 1.12e-33 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00643 - - gmx:100811366 536.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00643 08 5491231 5492757 Car08g00643 08 5491231 5492757 ECH