Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00566 ATGATTAAACTATTTAAAGTAAAGGAAAAGCAAAGAGAACTTGCAGAAAATGCCAGTGGTGGAGCCCCCGTTAAGAAGCAAAGTGCTGGCGAGTTGCGTCTTCACAAAGATATAAGTGAGCTGAATCTACCAAAATCTTGTACCATATCATTCCCCAATGGCAAAGATGACCTGATGAACTTTGAAGTTGTAATTCGACCTGATGATGGATTTTACTTAGGTGGCACATTTTTGTTTTCCTTCCAAGTGTCTCCCATCTATCCACACGAAGCACCCAAAGTGAAGAGCAAGACAAAAGTCTACCATCCAAATATTGATTTGGAAGGAAATGTTTGTCTCAACATCTTAAGAGAAGACTGGAAACCTGTCCTTAATATAAACACTGTCATCTATGGCTTGTATCATCTCTTTACGGAGCCAAATTACGAGGATCCCCTGAATCATGATGCAGCTGCTGTGTTGAGAGAGAACCCAAAGATGTTTGAATCTAATGTGAGGAGGGCAATGGCTGGTGGGTATGTGGGGCAAACCTTTTTCCCACGCTGTATGTAA 552 0.413 MIKLFKVKEKQRELAENASGGAPVKKQSAGELRLHKDISELNLPKSCTISFPNGKDDLMNFEVVIRPDDGFYLGGTFLFSFQVSPIYPHEAPKVKSKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLYHLFTEPNYEDPLNHDAAAVLRENPKMFESNVRRAMAGGYVGQTFFPRCM 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00566 183 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 101 116 IPR023313 -
Car08g00566 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 11 173 - -
Car08g00566 183 CDD UBCc 33 167 IPR000608 -
Car08g00566 183 Pfam Ubiquitin-conjugating enzyme 33 168 IPR000608 -
Car08g00566 183 Gene3D Ubiquitin Conjugating Enzyme 25 183 IPR016135 -
Car08g00566 183 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 29 174 IPR000608 -
Car08g00566 183 PANTHER - 11 173 - -
Car08g00566 183 SMART ubc_7 32 174 - -
Car08g00566 183 SUPERFAMILY UBC-like 22 181 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00566 Car-Chr8 4801206 4805520 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00566 K10579 - gmx:100813186 368.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00566 08 4801206 4805520 Car08g00566 08 4801206 4805520 ECH