Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00537 ATGACAGGTTCGTCTAGAAATGGACGAATATTCTTAGACGAAGGAAGCAGCATTCGCGGAAGAAAATACGGAAAATTAAAAAAGAACGAAAAAGACGAATTCGACGGTTACAACTCCGATAACCATCCAAGAAAAAACAGCCCCGTCGTCACCACCGACGCACCGCATTTAGATCCACAAATGGCAGCAGAGAATTCTCCATACGACGCTTCTCTCTCACCATTATCAAAATCACCATGGTCCTCACACGTCAACGAAGAAAATTCATCTTCCAACGACGAAGCTCTCGTTGGTTCATTAGTTCGTGAAGAAGGTCACATATATTCCCTCGCCGCAACAAAGGATTTATTATACACTGGTTCCGATAGCAAAAACATTCGCGTTTGGAAGAATCAAAAGGAATTCGCAGGGTTTAAATCAAACAGCGGTTTAGTAAAAGCGATTGTTATCGCCGGTGAAAAAATTCTCACCGGACATCAAGACGGAAGAATTCGCGTTTGGAAAGTTTCCGGCAAAAACGAACAAAACCATAAGCGCGTTGCCACGTTACCGACGTTAAGAAATTATATCAAATGTTCAATGAAACCGAGTAATTACGTTGAGGTTAGACGGCACCGTAACGTTTTGTGGATTAAACACTACGATGCAATTTCGTGTCTAAGTTTAACGGAAGATCATTCGTTAATTTATTCAGCTTCTTGGGATAAAACATTTAAAGTTTGGCGCGCTTCGAATTTCAAATGTTTAGAATCAGTAACGGCGCATGATGACGCCGTTAATGCGCTTGTAGTAGGTTTTGACGGTTTGGTTTTTACCGGCTCAGCTGACGGAACCGTTAAAATTTGGCGGCGTGAAATGCAAGGGAAAGGGACTAAGCATTTTTTTTCTCAGATTTTGTTGAAGCAAGAGTGTGCAGTTACGGCGTTAGCGTTAAATGTGGAAGGGACGTTTTTATACGCGGGTTCTTCGGATGGGTTGGTTAATTATTGGGTGCGTGGAACGAATTTGGAACACGGTGGAGTTTTGAGGGGTCATAAATTGGCAGTTTTGTGTTTAGCGACAGCTGGCAGTTTGTTATTTAGTGGTTCTGCTGACATGGCAATTTGTGTGTGGAAAAAATCGATAAGTAATGAACATGTTTGTATGTCTGTGTTGTCGGGGCATACCGGACCGGTGAAGTGTCTCGCCGCCGAGAAGGATCCCGATGCGATGTGTAATGAACGGCGGTGGATTTTGTATAGTGGAAGTTTGGATAAGTCTGTTAAGGTGTGGAAGGTTTCGGAGAGTGGGCCCACTGGACAACAGAATAATAATCATCCACCACCACCTCGTCTTAGTGGTGAGTTACCTAGAGTTTCTTCGTTAAGAAAAATGGGATCGCGAAGATTCTAG 1392 0.431 MTGSSRNGRIFLDEGSSIRGRKYGKLKKNEKDEFDGYNSDNHPRKNSPVVTTDAPHLDPQMAAENSPYDASLSPLSKSPWSSHVNEENSSSNDEALVGSLVREEGHIYSLAATKDLLYTGSDSKNIRVWKNQKEFAGFKSNSGLVKAIVIAGEKILTGHQDGRIRVWKVSGKNEQNHKRVATLPTLRNYIKCSMKPSNYVEVRRHRNVLWIKHYDAISCLSLTEDHSLIYSASWDKTFKVWRASNFKCLESVTAHDDAVNALVVGFDGLVFTGSADGTVKIWRREMQGKGTKHFFSQILLKQECAVTALALNVEGTFLYAGSSDGLVNYWVRGTNLEHGGVLRGHKLAVLCLATAGSLLFSGSADMAICVWKKSISNEHVCMSVLSGHTGPVKCLAAEKDPDAMCNERRWILYSGSLDKSVKVWKVSESGPTGQQNNNHPPPPRLSGELPRVSSLRKMGSRRF 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00537 463 MobiDBLite consensus disorder prediction 21 92 - -
Car08g00537 463 Pfam WD domain, G-beta repeat 340 372 IPR001680 GO:0005515
Car08g00537 463 Pfam WD domain, G-beta repeat 213 241 IPR001680 GO:0005515
Car08g00537 463 Pfam WD domain, G-beta repeat 381 425 IPR001680 GO:0005515
Car08g00537 463 Pfam WD domain, G-beta repeat 104 130 IPR001680 GO:0005515
Car08g00537 463 Pfam WD domain, G-beta repeat 247 282 IPR001680 GO:0005515
Car08g00537 463 MobiDBLite consensus disorder prediction 21 40 - -
Car08g00537 463 Gene3D - 199 293 IPR015943 GO:0005515
Car08g00537 463 MobiDBLite consensus disorder prediction 428 450 - -
Car08g00537 463 Gene3D - 294 446 IPR015943 GO:0005515
Car08g00537 463 SUPERFAMILY WD40 repeat-like 103 434 IPR036322 GO:0005515
Car08g00537 463 ProSiteProfiles Trp-Asp (WD) repeats profile. 342 372 IPR001680 GO:0005515
Car08g00537 463 ProSiteProfiles Trp-Asp (WD) repeats profile. 299 330 IPR001680 GO:0005515
Car08g00537 463 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 5 438 IPR045182 -
Car08g00537 463 ProSiteProfiles Trp-Asp (WD) repeats profile. 252 282 IPR001680 GO:0005515
Car08g00537 463 MobiDBLite consensus disorder prediction 66 92 - -
Car08g00537 463 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 252 282 - -
Car08g00537 463 CDD WD40 104 425 - -
Car08g00537 463 ProSiteProfiles Trp-Asp (WD) repeats profile. 210 251 IPR001680 GO:0005515
Car08g00537 463 SMART WD40_4 245 283 IPR001680 GO:0005515
Car08g00537 463 SMART WD40_4 292 331 IPR001680 GO:0005515
Car08g00537 463 SMART WD40_4 378 425 IPR001680 GO:0005515
Car08g00537 463 SMART WD40_4 335 372 IPR001680 GO:0005515
Car08g00537 463 SMART WD40_4 204 242 IPR001680 GO:0005515
Car08g00537 463 SMART WD40_4 131 168 IPR001680 GO:0005515
Car08g00537 463 SMART WD40_4 93 130 IPR001680 GO:0005515
Car08g00537 463 PRINTS G protein beta WD-40 repeat signature 155 169 IPR020472 -
Car08g00537 463 PRINTS G protein beta WD-40 repeat signature 270 284 IPR020472 -
Car08g00537 463 PRINTS G protein beta WD-40 repeat signature 412 426 IPR020472 -
Car08g00537 463 Gene3D - 75 195 IPR015943 GO:0005515
Car08g00537 463 PANTHER BNAANNG11810D PROTEIN 5 438 - -
Car08g00537 463 MobiDBLite consensus disorder prediction 428 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00537 Car-Chr8 4538601 4540262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00537 210 426 Miscellaneous Gene Families AT5G08390 23.214 4.47e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00537 - - gmx:100778593 793.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00537 08 4538601 4540262 Car08g00537 08 4538601 4540262 ECH