Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00522 ATGGTTTCCGAATCGGAACTCATCGGCCGCCTCCGCGAGTTCCTCCGTAGctccgacctcaacaccaccacaacctccaccgtccgccgccaGTTAGAGTCGGATTTTGGAATTGATTTGTCTGATAGAAAGGCATTCATCAGAGAACAGGTAGACTTGTTTCTTCAAAGCGTACAACAACAACAAGATGCTCAAGAAGAACCACAAAACGACGACGTAGAAGAACAAGTAGAAGAAGATGCGATTAAACCAGAACAAAGCCAAGGTTCTGGTTCAAAGGAAGATACAGAAGAAGAAGAAGAAGATGATGATGATGAAGATGGTAATGAAGAGGAAGAGGAGAAAAAAGAAAGACCAAAGCGTTCCAATAGTGTGAAGAAGAAGAAGAAGAATAAAGAACGATCAAACAAGTTGGGTAATGAGGTAGTAAAGAAAAAAGGCGGTGGCGGTTTTTGCAAATTATGTAGCCTGTCTCCACAACTTCAGGAATTCGTTGGAGCACCAGAGATGGCCCGAACCGAGGTTGTTAAGCAATTATGGGCCTATATTAGGGAGAAAAATTTGCAAGACCCAACCAATAGGCGAAATATCGTTTGTGATGAACCACTGCGGGCCCTTTTTGGTGTCAATACCATCAATATGTTCCAAATGAATAAAGTATTGACGAAGCATATCTGGCCACTGGATTCAGATGATGTTGTCCCAGTGAAGAAGTCGGCACCAAAGGAGAAGCAGAAGAAGCAAGAGAGAGAAGATGATTCAGATGAGCCGCAAAGAAAAGAAAAACGGCAGAAAGGAGGAGGAAAAGGTTTTCTTGCTCCACTTCAGCTATCTGATGCCCTAGTGAAGTTCCTTGGTACTGGAGAAAGCGAATTATCAAGATCTGATGTGATTAAAAGAATGTGGGATTATATAAAAGGAAACAACCTTCAGGATCCTTCTGACAAGAGGAATGTATTATGTGATGAAAAATTGAAAGAACTGTTTGATATTGACTCCTTCACTGGCTTCACTGTATCAAAACTGCTGGCTCCTCATTTCATAAAGACAGAGCATGGAAATTTTTGTATATTTTTAGTTCCCGAAGCTGCAAGGACAATGTTGACTCCATATTCTACTAACGAATTTGTTGATAGTAGGAGGTAA 1146 0.3927 MVSESELIGRLREFLRSSDLNTTTTSTVRRQLESDFGIDLSDRKAFIREQVDLFLQSVQQQQDAQEEPQNDDVEEQVEEDAIKPEQSQGSGSKEDTEEEEEDDDDEDGNEEEEEKKERPKRSNSVKKKKKNKERSNKLGNEVVKKKGGGGFCKLCSLSPQLQEFVGAPEMARTEVVKQLWAYIREKNLQDPTNRRNIVCDEPLRALFGVNTINMFQMNKVLTKHIWPLDSDDVVPVKKSAPKEKQKKQEREDDSDEPQRKEKRQKGGGKGFLAPLQLSDALVKFLGTGESELSRSDVIKRMWDYIKGNNLQDPSDKRNVLCDEKLKELFDIDSFTGFTVSKLLAPHFIKTEHGNFCIFLVPEAARTMLTPYSTNEFVDSRR 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00522 381 Gene3D - 1 57 - -
Car08g00522 381 Gene3D SWIB/MDM2 domain 145 233 IPR036885 -
Car08g00522 381 ProSiteProfiles SWIB/MDM2 domain profile. 270 349 IPR003121 -
Car08g00522 381 MobiDBLite consensus disorder prediction 236 271 - -
Car08g00522 381 SUPERFAMILY DEK C-terminal domain 3 56 - -
Car08g00522 381 SUPERFAMILY SWIB/MDM2 domain 148 229 IPR036885 -
Car08g00522 381 MobiDBLite consensus disorder prediction 94 112 - -
Car08g00522 381 MobiDBLite consensus disorder prediction 58 142 - -
Car08g00522 381 SMART swib_2 151 230 IPR019835 -
Car08g00522 381 SMART swib_2 271 352 IPR019835 -
Car08g00522 381 PANTHER SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN 1 350 - -
Car08g00522 381 CDD SWIB-MDM2_like 155 225 - -
Car08g00522 381 SUPERFAMILY SWIB/MDM2 domain 268 351 IPR036885 -
Car08g00522 381 CDD SWIB-MDM2_like 275 347 - -
Car08g00522 381 MobiDBLite consensus disorder prediction 236 267 - -
Car08g00522 381 Pfam SWIB/MDM2 domain 154 225 IPR003121 -
Car08g00522 381 Pfam SWIB/MDM2 domain 274 347 IPR003121 -
Car08g00522 381 Pfam DEK C terminal domain 2 55 IPR014876 -
Car08g00522 381 Gene3D SWIB/MDM2 domain 265 354 IPR036885 -
Car08g00522 381 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 1 350 - -
Car08g00522 381 ProSiteProfiles SWIB/MDM2 domain profile. 150 227 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00522 Car-Chr8 4452280 4457228 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Car08g00522 SWIB 2.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00522 K15223 - gmx:100784838 464.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00522 08 4452280 4457228 Car08g00522 08 4452280 4457228 ECH