Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00505 ATGTCCAATTTGAGTTTCATGAAGTTTCATGGTAGCTTTTCAGGCAAGGCAACTTCTCCAACAAAAAATGTATCTCAAAAGAACAGCTTCAAGTCAAAACAAACAACAAGTTCAGAAATGAGTTTCCAACCACAGAAAGAAGAAATAAAATGGGTGTTCGAGAAATTCGACACGAACAAAGATGGCAAGATTAGTCTTGAAGAGTACAAAGCAGCTGCAAAAGCTTTGGATAAAGGTATCGGTGACGCGGAGGCAATGAAGGCATTTAAAGCCATGGATTCTGACAAAGATGGCTTCATAGACTTTAAAGAGTTTATGGAAATGTTCAATGGTGAAGGGAAGATAAAAGAAGATGAGATTAAGAGTGCTTTTCAAGTTTTTGATATAAATGGTGATGGGAAAATTAGTGCTGAGGAATTGTCTCAAATTCTTAAGAAGCTTGGAGAGAGTTGCAGCCTTAGTGCTTGTAAAAAAATGGTGAAAGGTGTTGATGGTGATGGAGATGGTTTTATAAACTTGAATGAGTTTACAAGGATGATGATGAGTGGAAACAAACTTGTCTAA 564 0.367 MSNLSFMKFHGSFSGKATSPTKNVSQKNSFKSKQTTSSEMSFQPQKEEIKWVFEKFDTNKDGKISLEEYKAAAKALDKGIGDAEAMKAFKAMDSDKDGFIDFKEFMEMFNGEGKIKEDEIKSAFQVFDINGDGKISAEELSQILKKLGESCSLSACKKMVKGVDGDGDGFINLNEFTRMMMSGNKLV 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00505 187 PRINTS Recoverin family signature 52 73 - -
Car08g00505 187 PRINTS Recoverin family signature 76 95 - -
Car08g00505 187 PRINTS Recoverin family signature 98 116 - -
Car08g00505 187 ProSiteProfiles EF-hand calcium-binding domain profile. 44 79 IPR002048 GO:0005509
Car08g00505 187 Pfam EF hand 48 75 IPR002048 GO:0005509
Car08g00505 187 Pfam EF hand 156 182 IPR002048 GO:0005509
Car08g00505 187 ProSitePatterns EF-hand calcium-binding domain. 128 140 IPR018247 -
Car08g00505 187 CDD EFh 119 181 IPR002048 GO:0005509
Car08g00505 187 ProSitePatterns EF-hand calcium-binding domain. 57 69 IPR018247 -
Car08g00505 187 Gene3D - 4 114 - -
Car08g00505 187 SMART efh_1 48 76 IPR002048 GO:0005509
Car08g00505 187 SMART efh_1 119 147 IPR002048 GO:0005509
Car08g00505 187 SMART efh_1 84 112 IPR002048 GO:0005509
Car08g00505 187 SMART efh_1 155 183 IPR002048 GO:0005509
Car08g00505 187 PANTHER CALCIUM-BINDING PROTEIN CML34-RELATED 1 186 - -
Car08g00505 187 Pfam EF-hand domain pair 84 144 IPR002048 GO:0005509
Car08g00505 187 ProSiteProfiles EF-hand calcium-binding domain profile. 115 150 IPR002048 GO:0005509
Car08g00505 187 MobiDBLite consensus disorder prediction 12 44 - -
Car08g00505 187 CDD EFh 48 109 IPR002048 GO:0005509
Car08g00505 187 Gene3D - 115 186 - -
Car08g00505 187 ProSiteProfiles EF-hand calcium-binding domain profile. 151 186 IPR002048 GO:0005509
Car08g00505 187 ProSiteProfiles EF-hand calcium-binding domain profile. 80 114 IPR002048 GO:0005509
Car08g00505 187 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 186 - -
Car08g00505 187 SUPERFAMILY EF-hand 45 182 IPR011992 -
Car08g00505 187 ProSitePatterns EF-hand calcium-binding domain. 164 176 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00505 Car-Chr8 4241851 4242747 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00505 1 184 EF-hand Containing Proteins AT2G15680 43.011 2.77e-49 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00505 K13448 - gmx:100787013 290.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00505 08 4241851 4242747 Car08g00505 08 4241851 4242747 ECH