Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00360 ATGGTTCTTCACCACTCTCCAATCCTTTTCCCGCCGTTGATGCGCGGTTCCAGTTTCAGTCTACGACGCTTCTCTCTTTCCAACCATTCTCATTCCTTCAAACCTCTCTTTCCTTTTCCTCCTAAACACGAATTCGACGAATCTCAGCTCTTCCACTACCTAACTAAAGGGTTGCATCACGAAGCACGAAAAATTCTTCAAACTTTTCCATGCAAAAATCCCCACACCCGTGTGGTTCACTGGACCTCCTTGCTCACCAACTACGCCCGACATGGTTACCTACAACaagctcggaacttgttcgacgcaatgcctcacagaaacattgtcactcacaatgcaatgttgtctgcatacctgtacaatggtatgattcgccatgctcaatggtttttcaatgatatgcctgagaggaatgttgtttcttggacagcaatgcttagtgggtatgctgattcgggtaagatcgaagatgcgaggaaggtgtttgatgaaatgcctgacaagaatgttgtttcgtggaactcgatggtggtggggttgattaggaatggtaatttggatgaagcgaggatggtttttgaacgtaccccttttaaaaatgtggtgtcttggaatgcgatgattgagggttatgttgaaagtggtagaatggatgaagcaagagctttgtttgatcaaatggggtgtaggaatgtggttacttggactagtatgatatctgggtattgtcgtgtcggtgatgtggatgaggcttggtgtttgttccggattatgccggagaaaaatgttgtttcttggactgcgatgattggtgggtttgcgtggaatggaTTCTATCAAGAGGCAGTGTTGCTTTTTCTTCAGATGATGACACTTTCTGAAGCAAAACCCAATGGAGAGACCTTTGTTTCTCTTGCCTACGCTTGTGCTGGTTTGGGGTTTCCTTGTCTTGGCAAGCAATTGCATGCTCAGATGATTGTTAATAGCTGGAAGTTTGATGATTATGATGGTAGGTTAGGGAGAAGTCTTGTTAGGATGTACTCTGTGTGTGGTCTTGTGGACTCTGCGCGCAGTTTGTTCGACGGTGATCTGAAAAACTGTGATGATCAGTCTTTCAATTCTATGATAAATGGATATGTTCAGGCTGGTCAGTTAGAAAAGGCTCGAGAGTTGTTTGACACGGTCCCTATTCGAAACAAAATTGCATGGACTTGCATGATTTCCGGATATCTTAGTGATGGACAAGTATTAAAGGCATGCAGTCTCTTTGATGACATGCCTGATAGTGATAAGGATTCCATTGCATGGACTTCAATGATTTATGGGCATGTCCAAAATGAGCTAATTGCTGAAGCCATCAACTTATTTGCTGAAATGATGGCTCAAGGTGTTCCTCCTATAAATTCTACTTATGCTGTTCTTTTTGGAGCTGTGGGATCTGTTGCATATCTTGATCTGGGGCTGCAACTACATAGTATGCAGTTAAAGACTATAGATGAATATGAACATGATTTGCATCTTGACAACTCTCTGATTTCAATGTATGCAAAATGTGGGGAGATAGATGATGCATATAGGATATTTTCAAACATGACTTGTCGAGACAAAATATCATGGAACTCCATGATCATGGGCCTTTCAGATCATGGGAGGGCCAGTGAAGCTTTGAAGATGTATGAAAACATGCTCGAACTTGGGGTTTACCCAGATGCTGTTACTTTCCTTGGTGTCCTAACAGCGTGTGCTCATGCGGGTCTTGTTGATAAAGGGTGGGAGTTATTAAGTGTTATGGTCAATGATTATGACCTTCAACCTGGCTTGGAGCATTATATTAGCATCATCAATCTTCTGGGCCGAGCTGGAAGAGTGAAGGACGCAGAGGAGTTTGTGTTGAGGCTACCTGTTGAACCAAATCATGCGATTTGGGGGGCGTTGATTGGAGTGTGTGGTTTGAGTAAAACAGATGCAGATGTTGCTAGACGAGCAGCCAAACGATTGCTTGAGTTGGATCCTCTGAATGCACCAGGTCATGTGACCCTTTGCAACATATATGCTGCGAATAATAGACACATTGAGGAGACAAGTTTAAGAAGAGAAATGAGGATGAAAGGTGTGAGGAAGGCACCTGGATGTAGTTGGATATTAGAGAAGGGTAGCGTTCATGTTTTCTCATCTGGTGATAGATTAGATCCACAAGGAGAAGATATGTTGCTATTAATTTAA 2226 0.3221 MVLHHSPILFPPLMRGSSFSLRRFSLSNHSHSFKPLFPFPPKHEFDESQLFHYLTKGLHHEARKILQTFPCKNPHTRVVHWTSLLTNYARHGYLQQARNLFDAMPHRNIVTHNAMLSAYLYNGMIRHAQWFFNDMPERNVVSWTAMLSGYADSGKIEDARKVFDEMPDKNVVSWNSMVVGLIRNGNLDEARMVFERTPFKNVVSWNAMIEGYVESGRMDEARALFDQMGCRNVVTWTSMISGYCRVGDVDEAWCLFRIMPEKNVVSWTAMIGGFAWNGFYQEAVLLFLQMMTLSEAKPNGETFVSLAYACAGLGFPCLGKQLHAQMIVNSWKFDDYDGRLGRSLVRMYSVCGLVDSARSLFDGDLKNCDDQSFNSMINGYVQAGQLEKARELFDTVPIRNKIAWTCMISGYLSDGQVLKACSLFDDMPDSDKDSIAWTSMIYGHVQNELIAEAINLFAEMMAQGVPPINSTYAVLFGAVGSVAYLDLGLQLHSMQLKTIDEYEHDLHLDNSLISMYAKCGEIDDAYRIFSNMTCRDKISWNSMIMGLSDHGRASEALKMYENMLELGVYPDAVTFLGVLTACAHAGLVDKGWELLSVMVNDYDLQPGLEHYISIINLLGRAGRVKDAEEFVLRLPVEPNHAIWGALIGVCGLSKTDADVARRAAKRLLELDPLNAPGHVTLCNIYAANNRHIEETSLRREMRMKGVRKAPGCSWILEKGSVHVFSSGDRLDPQGEDMLLLI 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00360 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 433 467 IPR002885 -
Car08g00360 741 Pfam PPR repeat 230 259 IPR002885 -
Car08g00360 741 Pfam PPR repeat 201 228 IPR002885 -
Car08g00360 741 Pfam PPR repeat 403 429 IPR002885 -
Car08g00360 741 Pfam PPR repeat 79 109 IPR002885 -
Car08g00360 741 Pfam PPR repeat 372 394 IPR002885 -
Car08g00360 741 Pfam PPR repeat 611 631 IPR002885 -
Car08g00360 741 Pfam PPR repeat 265 291 IPR002885 -
Car08g00360 741 Pfam PPR repeat 510 534 IPR002885 -
Car08g00360 741 Pfam PPR repeat 172 196 IPR002885 -
Car08g00360 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 536 570 IPR002885 -
Car08g00360 741 SUPERFAMILY TPR-like 231 690 IPR011990 GO:0005515
Car08g00360 741 TIGRFAM PPR: pentatricopeptide repeat domain 141 171 IPR002885 -
Car08g00360 741 TIGRFAM PPR: pentatricopeptide repeat domain 538 572 IPR002885 -
Car08g00360 741 TIGRFAM PPR: pentatricopeptide repeat domain 510 535 IPR002885 -
Car08g00360 741 TIGRFAM PPR: pentatricopeptide repeat domain 372 394 IPR002885 -
Car08g00360 741 TIGRFAM PPR: pentatricopeptide repeat domain 436 467 IPR002885 -
Car08g00360 741 TIGRFAM PPR: pentatricopeptide repeat domain 234 264 IPR002885 -
Car08g00360 741 TIGRFAM PPR: pentatricopeptide repeat domain 172 196 IPR002885 -
Car08g00360 741 TIGRFAM PPR: pentatricopeptide repeat domain 203 232 IPR002885 -
Car08g00360 741 TIGRFAM PPR: pentatricopeptide repeat domain 403 430 IPR002885 -
Car08g00360 741 Gene3D Tetratricopeptide repeat domain 199 261 IPR011990 GO:0005515
Car08g00360 741 Gene3D Tetratricopeptide repeat domain 262 337 IPR011990 GO:0005515
Car08g00360 741 Gene3D Tetratricopeptide repeat domain 338 398 IPR011990 GO:0005515
Car08g00360 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 231 IPR002885 -
Car08g00360 741 Gene3D Tetratricopeptide repeat domain 47 198 IPR011990 GO:0005515
Car08g00360 741 Gene3D Tetratricopeptide repeat domain 507 735 IPR011990 GO:0005515
Car08g00360 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 505 535 IPR002885 -
Car08g00360 741 Gene3D Tetratricopeptide repeat domain 399 506 IPR011990 GO:0005515
Car08g00360 741 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 265 728 - -
Car08g00360 741 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 112 201 - -
Car08g00360 741 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 198 265 - -
Car08g00360 741 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 34 111 - -
Car08g00360 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Car08g00360 741 SUPERFAMILY TPR-like 53 196 IPR011990 GO:0005515
Car08g00360 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 139 173 IPR002885 -
Car08g00360 741 Pfam E motif 656 715 IPR046848 -
Car08g00360 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 403 IPR002885 -
Car08g00360 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 77 111 IPR002885 -
Car08g00360 741 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 265 728 - -
Car08g00360 741 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 198 265 - -
Car08g00360 741 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 112 201 - -
Car08g00360 741 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 34 111 - -
Car08g00360 741 Pfam PPR repeat family 138 171 IPR002885 -
Car08g00360 741 Pfam PPR repeat family 536 583 IPR002885 -
Car08g00360 741 Pfam PPR repeat family 432 478 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00360 Car-Chr8 2939990 2942313 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00360 79 737 Glycoside Hydrolase AT3G49170 30.899 1.55e-84 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00360 - - gmx:102669560 1087.4