LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car08g00358	ATGTATCTTGAAGATCGAACTGTTCGGCTGCAGTTGTGGGATACAGCTGGGCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATCAGGGACTCGTCTGTTGCTGTCATAGTTTATGATGTTGCAAGCCGTCAAACTTTCCTTAACACGTCAAAGTGGATTGAAGAGGTTCGCAGTGAGAGAGGCAGTGATGTTATTGTTGTGCTTGTTGGGAACAAAACTGACCTTGTTGAAAAGAGGCAAGTCTCTACAGAGGAAGGGGAAGCTAAATCTCGTGAGCTTAATGTCATGTTCATTGAAGCTAGTGCAAAAGCCGGCTTTAATATAAAGGCTCTCTTTCGAAAAATTGCTGCTGCATTACCTGGAATGGAAACCCTATCTTCCACAAAACAAGAAGATCTGGTTGATGTGAACCTAAAATCTTCTGGTGGCCATGATTCTCAAACTCAGTCTGGTGGATGTTCTTGCTGA	471	0.4289	MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTSKWIEEVRSERGSDVIVVLVGNKTDLVEKRQVSTEEGEAKSRELNVMFIEASAKAGFNIKALFRKIAAALPGMETLSSTKQEDLVDVNLKSSGGHDSQTQSGGCSC	156

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car08g00358	156	TIGRFAM	small_GTP: small GTP-binding protein domain	7	116	IPR005225	GO:0005525
	Car08g00358	156	ProSiteProfiles	small GTPase Ras family profile.	1	156	IPR001806	GO:0003924\|GO:0005525
	Car08g00358	156	Pfam	Ras family	3	119	IPR001806	GO:0003924\|GO:0005525
	Car08g00358	156	PANTHER	SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED	1	156	-	-
	Car08g00358	156	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	2	130	IPR027417	-
	Car08g00358	156	PRINTS	Transforming protein P21 ras signature	98	120	-	-
	Car08g00358	156	PRINTS	Transforming protein P21 ras signature	1	23	-	-
	Car08g00358	156	PRINTS	Transforming protein P21 ras signature	63	76	-	-
	Car08g00358	156	SMART	rab_sub_5	1	123	-	-
	Car08g00358	156	SMART	ras_sub_4	3	123	-	-
	Car08g00358	156	CDD	Rab6	1	120	-	-
	Car08g00358	156	ProSiteProfiles	small GTPase Rab1 family profile.	1	156	-	-
	Car08g00358	156	SMART	rho_sub_3	2	122	IPR001806	GO:0003924\|GO:0005525
	Car08g00358	156	Gene3D	-	1	151	IPR027417	-
	Car08g00358	156	PANTHER	DRAB5-RELATED	1	156	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car08g00358	Car-Chr8	2931966	2934852	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car08g00358	K07893		-	gmx:100790511	295.049

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car08g00358	08	2931966	2934852	Car08g00358	08	2931966	2934852	ECH
	Car08g00358	08	2931966	2934852	Car07g01313	07	12080451	12087060	PCT