Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00351 ATGGCTCTAACAACTCGTTTTTCAATTTCTTTGATGAATAAAAAAGACACAAGAGTCCTAAAATCTCTAGATGATATTTCTACCAAAGTTTATTTACCAAAAATGAAACCATTGTTCCATATAAAAGCAAAGAGTTCAATGCAAGAATCACATTTCACAAAGGAGAACAACAAAAACAATCAAGTAGTAAATAAAAACAAGAAATCAGACAACATTACAGCGCCATCGGTGACTCATAATCATGACGATGATTCGAATAGAGTGCCTGTTTTTGTTATGTTGCCATTAGACACAGTGTCAATGGGAGGAAATTTGAATAAGCAAAAAGCAATGAATGTTAGTTTGATGGCTTTGAAGAGTGCTGGAGTTGAAGGTGTTATGGTGGATGCTTGGTGGGGTTTGGTTGAAAAAGATGGTCCTATGAAGTATAATTGGGAAGGTTATTTTGAGCTTGTGCAAATGGTACAAAAGCATGGCTTAAAGCTTCAAATTGTTATGTCTTTTCATCAATGTGGAGGAAATGTTGGAGACTCTTGCAGCATTCCTCTACCTCCTTGGGTGTTGGAAGAAGTGAGCAAGAATCCTGATCTTGTTTACACAGACAAATTAGGGAGAAGGAATCCTGAATACATATCATTGGGTTGTGATTCAGTTCCTATTTTAGGAGGAAGGACCCCACTTCAGGTTTACTCTGATTACATGAGAAGTTTCCGTGATAGATTCAAAGATTATTTGGGCACTGTTATCATTgaagttcaagtgggattaggtccttgtggagagctgagatatccatcttatcctgaaagtgatggaacttggaggtttccaggaattggagaattccaatgctacgacaagTATATGATAGCATCCTTGGAAGCATCAGCTGATGCAATTGGGAAAAGAGATTGGGGAAGAAGTGGGCCCCATGATTCAGGTCAATACAATCAATATCCAGAGGACACTGGATTTTTCAAAAGAGAAGGAACATGGAACACAGAATATGGAAACTTTTTCCTTGATTGGTACTCAACAAAACTTGTAGAACATGGTGAAAAAATCCTAGTATCAGCAAAAAACATATTCCAAACAAGTGAAGTAAAACTCTCAGCCAAAATAGCTGGAATTCATTGGCATTACAACGCAAGATCACATGCAACTGAATTAACAGCAGGGTATTATAACACAAGGTATCATGATGGTTATTTACCAATAGCAAAAATGTTAGCAAAACATGGTGTTGTGTTGAATTTCACTTGCATGGAAATGAAGGATAATGAACAACCTCATCATGCTAATTGTTCACCAGAAGGGTTGGTTAATCAAGTTAAGAATGCAACAAAGATTGCTGGTGGAGAATTAGCTGGTGAGAATGCATTGGAGAGATATGATTCAAGTGCTTATGATCAAGTTTTGAAAACAAGTGGTTTAAGTGCTTTTACTTATTTAAGAATGAATAGGAGATTGTTTGAGGGTGATAATTGGAGAAACTTTGTTGAGTTTGTTAAGAATATGTCTGATGATTGTTTGAGACAGAGGCTTTCAGAATCTGATTCTTATGGGACTGATCTTTATGTTGGACATATTAAAGGGATTAAGAAGGAGGATCAAGCTCAAGAAATTGTTCTTGTGTGA 1638 0.3376 MALTTRFSISLMNKKDTRVLKSLDDISTKVYLPKMKPLFHIKAKSSMQESHFTKENNKNNQVVNKNKKSDNITAPSVTHNHDDDSNRVPVFVMLPLDTVSMGGNLNKQKAMNVSLMALKSAGVEGVMVDAWWGLVEKDGPMKYNWEGYFELVQMVQKHGLKLQIVMSFHQCGGNVGDSCSIPLPPWVLEEVSKNPDLVYTDKLGRRNPEYISLGCDSVPILGGRTPLQVYSDYMRSFRDRFKDYLGTVIIEVQVGLGPCGELRYPSYPESDGTWRFPGIGEFQCYDKYMIASLEASADAIGKRDWGRSGPHDSGQYNQYPEDTGFFKREGTWNTEYGNFFLDWYSTKLVEHGEKILVSAKNIFQTSEVKLSAKIAGIHWHYNARSHATELTAGYYNTRYHDGYLPIAKMLAKHGVVLNFTCMEMKDNEQPHHANCSPEGLVNQVKNATKIAGGELAGENALERYDSSAYDQVLKTSGLSAFTYLRMNRRLFEGDNWRNFVEFVKNMSDDCLRQRLSESDSYGTDLYVGHIKGIKKEDQAQEIVLV 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00351 545 PANTHER BETA-AMYLASE 1 545 - -
Car08g00351 545 SUPERFAMILY (Trans)glycosidases 86 512 IPR017853 -
Car08g00351 545 Gene3D Glycosidases 78 539 - -
Car08g00351 545 MobiDBLite consensus disorder prediction 50 79 - -
Car08g00351 545 PANTHER - 1 545 IPR001554 GO:0000272|GO:0016161
Car08g00351 545 Pfam Glycosyl hydrolase family 14 91 502 IPR001554 GO:0000272|GO:0016161
Car08g00351 545 ProSitePatterns Beta-amylase active site 1. 169 177 IPR018238 GO:0000272|GO:0016161
Car08g00351 545 MobiDBLite consensus disorder prediction 49 82 - -
Car08g00351 545 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 122 136 IPR001554 GO:0000272|GO:0016161
Car08g00351 545 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 143 161 IPR001554 GO:0000272|GO:0016161
Car08g00351 545 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 165 186 IPR001554 GO:0000272|GO:0016161
Car08g00351 545 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 257 279 IPR001554 GO:0000272|GO:0016161
Car08g00351 545 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 332 351 IPR001554 GO:0000272|GO:0016161
Car08g00351 545 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 368 384 IPR001554 GO:0000272|GO:0016161
Car08g00351 545 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 385 396 IPR001554 GO:0000272|GO:0016161
Car08g00351 545 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 403 426 IPR001554 GO:0000272|GO:0016161
Car08g00351 545 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 440 462 IPR001554 GO:0000272|GO:0016161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00351 Car-Chr8 2740719 2743646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00351 1 545 Glycoside Hydrolase AT4G17090 68.412 0.0 793
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00351 K01177 - gmx:100786079 865.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00351 08 2740719 2743646 Car08g00351 08 2740719 2743646 ECH