Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00346 ATGGGCTGCTTCCACTCTAAAGGAAGAAAATGTCTAAGGCAGGAAGACCCAACAATTCTTGCATCAGAAACAGCTTTCAGTGTTAGTGATGTTGAAGCATTATTTGAGCTTTTTAAGAGCATCAGTAGATCTGTAATTGATGATGGACTAATAAGCAAGGAAGAATTTCAATTGGCAATTTTCGATAATAGAGCAAAGGAAAATCTTTTCACAAGTCGGATCTTTGATTTATTTGACGTGAAGGGAAAAGGAGTAATTGACTTTGGTGACTTTGTGAGAGCACTCAATGTCTTCCACCCAAATGCACCACAAGAAGTCAAGATAGATTTTTCCTTTAGACTCTATGATCTGGACAATACAGGTTTTATAGAGCGCCATGAGGTCAAGCAAATGATAAATGCACTTTTATATGAATCAGAAATTAAGTTAAGTGACGAGATGATAGAAACAATTATTCAAAAGACTTTCTTGGATGCTGACCCAAATCAAGATGGAAAAATAGACAAATCTGAGTGGAAAGATTTTGTTGCTGAAAATCCATCACTGCTAAAAATCATGACACTGCCCTACCTAAGGGATATAACAACAACTTTTCCCAGTTTTGTATTTAACTCGAAGGTGGATGATGACATTGCTGACTGA 642 0.3645 MGCFHSKGRKCLRQEDPTILASETAFSVSDVEALFELFKSISRSVIDDGLISKEEFQLAIFDNRAKENLFTSRIFDLFDVKGKGVIDFGDFVRALNVFHPNAPQEVKIDFSFRLYDLDNTGFIERHEVKQMINALLYESEIKLSDEMIETIIQKTFLDADPNQDGKIDKSEWKDFVAENPSLLKIMTLPYLRDITTTFPSFVFNSKVDDDIAD 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00346 213 ProSitePatterns EF-hand calcium-binding domain. 116 128 IPR018247 -
Car08g00346 213 ProSiteProfiles EF-hand calcium-binding domain profile. 147 182 IPR002048 GO:0005509
Car08g00346 213 ProSitePatterns EF-hand calcium-binding domain. 160 172 IPR018247 -
Car08g00346 213 PRINTS Recoverin family signature 12 26 - -
Car08g00346 213 PRINTS Recoverin family signature 74 95 - -
Car08g00346 213 PRINTS Recoverin family signature 121 139 - -
Car08g00346 213 PRINTS Recoverin family signature 167 187 - -
Car08g00346 213 ProSiteProfiles EF-hand calcium-binding domain profile. 66 101 IPR002048 GO:0005509
Car08g00346 213 Pfam EF-hand domain pair 107 173 IPR002048 GO:0005509
Car08g00346 213 PANTHER CALCINEURIN B 1 213 IPR045198 GO:0005509|GO:0019722|GO:0019900
Car08g00346 213 ProSiteProfiles EF-hand calcium-binding domain profile. 103 138 IPR002048 GO:0005509
Car08g00346 213 CDD EFh 107 177 IPR002048 GO:0005509
Car08g00346 213 PANTHER CALCINEURIN B-LIKE PROTEIN 1 213 - -
Car08g00346 213 SMART efh_1 151 179 IPR002048 GO:0005509
Car08g00346 213 SMART efh_1 70 98 IPR002048 GO:0005509
Car08g00346 213 SMART efh_1 107 135 IPR002048 GO:0005509
Car08g00346 213 SUPERFAMILY EF-hand 19 202 IPR011992 -
Car08g00346 213 Gene3D - 16 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00346 Car-Chr8 2713059 2715557 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00346 1 209 EF-hand Containing Proteins AT4G17615 76.667 8.77e-114 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00346 K06268 - gmx:100779020 348.591
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00346 08 2713059 2715557 Car08g00346 08 2713059 2715557 ECH
Car08g00346 08 2713059 2715557 Car07g01294 07 11858486 11862451 PCT