Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00298 ATGAGTTTTCCAAAGACGAAGGGAGAATACAGAGACATTACTATAACACGAAGCGATAAAGAAGATAGTGTTCAGAGATCGAAATTTAAATCAGGTAGTTTTAGCAGGAAAAAAACGTTACATCCTCCGATTGAAACGCATTGGCATCTTCCTGAACAAAAAGTAGAGGAAAAAGTTTCATTCTCCATTAAGTCATTGTTTTCTTTCATGAAACTTCGAAGGAGTAAAAGTCTGCAAATTATTCTAGAAGGAACTCATGATCCAGATGATGAACAAATCATCGAGACTTTTCGCGAATTGCTTTCTCGTGAGGGTTTATTACCATCTAAGCACAACGATTATCATACTCTTCTAAGGTTTCTACGCATGAATGATTTTGATATGACAGTGTCCAGAGATATGTTTCTCAATTATCTTAAATGGCGTAAGGAATTTCGAGTTGACATGCTCCATAAGGAATTCGAATTCACGGAGTACACAGAAGTGAAGAAATGCTATCCTCATGGATACCATGGAGTTGATAGATGTGGAAGACCTCTGTATATTGAGAGAATTGGGATGATAGATATTAACAAACTTTGCGAAGTAACAACACATGAAAGGTTTATCAGGCATCATGTGTCAGAACAAGAGAAAACACTACGAGTAAGGTACCCTGCATGTTCACTACAAGCTAAAAAGCACATAGCATCCACCACAAGTATCTTGGATGTCAATGGAGTAGGAATGTCTAATTTTTCAAAGCCTGCAAGGTTCATTTTTATGGAAATTCAGAAGATTGATAGTAGTTACTATCCTGAGACTTTAAATAAACTCTTTATTGTTAATGCTGGTTCTCGGTTTAAAATGTTGTGGAAAGCAGTGAAGGCTTTCCTAAGTGAACGAACTGTAGCGAAAATTCAAGTGTTGGGTTCTAATTATCTCAATGTGTTGCTAGAGGTTATTGATCCAAGTAACTTGCCAACTTTTTTGGGTGGTAATTGCACATGTTCTGATTATGGAGGTTGTTTGATGAGTGATCAAGGCCCATGGAAAAATTCAGATTTGTTAGAAATAATTCAGGCAGTTCCCTTAACAGAAGAGATTGATGGTACGAGTGAAGACGATGATGTGCCTTCAGAAGGATCCTTGATCCCCCAAAAGGTTGACATGCAAAACAAAGATTATGTTAGTATGAGTTTGGCACTTGAAAAGACAACATATGCAAGAACAAACTCATCATGTAGGTTAGCATTACAAAAAATTGATTGGCTTGAAGTTACTCTTGGAGAAATTAAGGATAAAATCAAGATATTGGAAGATGCACTTCAAGACACTAAGATGGCATTGAAAGAACTTGCACACCATACAGAACAACAAAAAATGTGA 1368 0.3662 MSFPKTKGEYRDITITRSDKEDSVQRSKFKSGSFSRKKTLHPPIETHWHLPEQKVEEKVSFSIKSLFSFMKLRRSKSLQIILEGTHDPDDEQIIETFRELLSREGLLPSKHNDYHTLLRFLRMNDFDMTVSRDMFLNYLKWRKEFRVDMLHKEFEFTEYTEVKKCYPHGYHGVDRCGRPLYIERIGMIDINKLCEVTTHERFIRHHVSEQEKTLRVRYPACSLQAKKHIASTTSILDVNGVGMSNFSKPARFIFMEIQKIDSSYYPETLNKLFIVNAGSRFKMLWKAVKAFLSERTVAKIQVLGSNYLNVLLEVIDPSNLPTFLGGNCTCSDYGGCLMSDQGPWKNSDLLEIIQAVPLTEEIDGTSEDDDVPSEGSLIPQKVDMQNKDYVSMSLALEKTTYARTNSSCRLALQKIDWLEVTLGEIKDKIKILEDALQDTKMALKELAHHTEQQKM 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00298 455 CDD SEC14 159 327 IPR001251 -
Car08g00298 455 Pfam CRAL/TRIO domain 166 326 IPR001251 -
Car08g00298 455 Gene3D - 70 145 - -
Car08g00298 455 SMART sec14_4 158 329 IPR001251 -
Car08g00298 455 Coils Coil 422 449 - -
Car08g00298 455 MobiDBLite consensus disorder prediction 10 27 - -
Car08g00298 455 MobiDBLite consensus disorder prediction 1 37 - -
Car08g00298 455 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH11 34 453 - -
Car08g00298 455 SUPERFAMILY CRAL/TRIO domain 158 350 IPR036865 -
Car08g00298 455 SMART CRAL_TRIO_N_2 113 138 IPR011074 -
Car08g00298 455 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 158 332 IPR001251 -
Car08g00298 455 Gene3D - 147 364 IPR036865 -
Car08g00298 455 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 34 453 - -
Car08g00298 455 SUPERFAMILY CRAL/TRIO N-terminal domain 84 153 IPR036273 -
Car08g00298 455 PRINTS Cellular retinaldehyde-binding protein signature 116 138 - -
Car08g00298 455 PRINTS Cellular retinaldehyde-binding protein signature 285 304 - -
Car08g00298 455 PRINTS Cellular retinaldehyde-binding protein signature 318 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00298 Car-Chr8 2344916 2353484 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00298 91 323 Acyl Lipid Metabolism Gene Families AT5G47730 29.339 1.32e-21 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00298 - - vun:114174105 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00298 08 2344916 2353484 Car08g00298 08 2344916 2353484 ECH