Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00260 ATGAGAGTGATAGTGCCTTTGCAAGGAGTTGTTCAAGGAACAGGTGGTCTTATTTGGGGTTCAGTTATTCCTTGTGCTCTCTTCTATTTTCTTCAGCTTTATTTTAAGACACGTCACCGTAATCGCCAATCTCCTCCTTCCAACAACCTTCCGCTTCCAGAGCTCTCCGTCTTGCCACGCTCTCTCTCCCAGCGGGTCAGAGGTTCAACCGCATCCGCTTGTATATCGGGTCGGGTCAATTCCATAGTTGCAGAATCTCCTTATTACGTAGGTTTAAACAAGGTCGCAGATAACCCTTACCATCAGATTCATAATCCCGATGGTGTTATTCAGCTTGGTTTGCACCAAAACACTCTATCTGTGGATTTGATTCAAGAATGGATTCGTCACTGTGGAAGCGCTGCTATATTGGGGACACCAGCAAATTGTGGATGCCTCAATATTACTGACCTTGCTCCTTACCATGGATTCATGGACTTCAAAGTGGCTGTGGCTGGTTTCATTTCTCAAGTTTTGGAAAAGCCGGTTTTCTTCAACCCCTCCCACATGGTACTTACTACAGGTGCCATCCCTGCCATTGAAATTCTAAGCTTCTGCCTAGCAGATAATGGAAATGCATTCCTTGTTCCCACACCTCATTGTCCTGGCTTTGACGAGGATGTAAAATTGCGAACAGGCGTGGATATAGTGTCTGTTCCTTGTCGCAGCGCTGATGACTTCAATCTAAGCATAACTGCGCTTGACCAAGCCTTCAACCAAGCAAAGAAACGTAGTCAGAAAGTTCGTGGAGTTATAATATCGAACCCTTCAAACCCTGCTGGCAAACTGTTAAATCGGGAAACACTACTTGATCTTCTGGACTTTGCTAGAGAGAAAAACATTCACATAATCTCTAATGAAATATTTGCAGGCTCTACTTTTGGAAACACAGAATTTGTGAGCATGGCAGAAATCATGGAAGCAGAAGATCGTGATCGGGACAGAGTTCATATAGTGTTTGATCTAGCAAATGAGCTCTCTGTTCCAAGTTTTGAAGCGGGTGTCATCTACTCCTATAATGAGCATGTTGTGGCTGCTTCCAAAAAATTGGCAAAATTCTCAACTGTTTCTGCTCCAACTCAGCAACTGCTTATCTCCATGATTTCAGATACAACGTTTATACAAGAGCTCATAAAGACAAACAAATTAAGGCTGCAGAAAATGTACAATACATTTGTGGCAGGATTAGATCAGTTGGGAATTGAGTGTGCCAGAAGCAGTGGTGGTTATTGCTGCTGGGCGGACTTAAGCAGATTAATCCGTTCTTACAGTGAAAAGGGGGAACTAGAGCTCTGGGATAGATTGCTGAATGTAGCTAAGATCAATGTTACCCCGGGATCCTCTTGTCACTGTATTGAACCTGGATGGTTCCGTTTTTGTTTTACTACATTGACTGAAAAGGATATTCCTGTAGTAATGGAACGGATTGGGAGAATTTCTGAGACCACAAGTTGA 1494 0.4331 MRVIVPLQGVVQGTGGLIWGSVIPCALFYFLQLYFKTRHRNRQSPPSNNLPLPELSVLPRSLSQRVRGSTASACISGRVNSIVAESPYYVGLNKVADNPYHQIHNPDGVIQLGLHQNTLSVDLIQEWIRHCGSAAILGTPANCGCLNITDLAPYHGFMDFKVAVAGFISQVLEKPVFFNPSHMVLTTGAIPAIEILSFCLADNGNAFLVPTPHCPGFDEDVKLRTGVDIVSVPCRSADDFNLSITALDQAFNQAKKRSQKVRGVIISNPSNPAGKLLNRETLLDLLDFAREKNIHIISNEIFAGSTFGNTEFVSMAEIMEAEDRDRDRVHIVFDLANELSVPSFEAGVIYSYNEHVVAASKKLAKFSTVSAPTQQLLISMISDTTFIQELIKTNKLRLQKMYNTFVAGLDQLGIECARSSGGYCCWADLSRLIRSYSEKGELELWDRLLNVAKINVTPGSSCHCIEPGWFRFCFTTLTEKDIPVVMERIGRISETTS 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00260 497 Gene3D Aspartate Aminotransferase, domain 1 98 488 IPR015422 GO:0003824
Car08g00260 497 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 112 138 - -
Car08g00260 497 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 145 161 - -
Car08g00260 497 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 182 202 - -
Car08g00260 497 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 204 225 - -
Car08g00260 497 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 258 282 - -
Car08g00260 497 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 294 317 - -
Car08g00260 497 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 328 352 - -
Car08g00260 497 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 360 383 - -
Car08g00260 497 PANTHER AMINOTRANSFERASE ACS12-RELATED 2 495 - -
Car08g00260 497 Gene3D - 132 383 IPR015421 GO:0003824
Car08g00260 497 SUPERFAMILY PLP-dependent transferases 88 492 IPR015424 -
Car08g00260 497 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 2 495 - -
Car08g00260 497 CDD AAT_like 153 491 - -
Car08g00260 497 Pfam Aminotransferase class I and II 150 489 IPR004839 GO:0009058|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00260 Car-Chr8 2087336 2093745 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00260 K14270 - gmx:100783490 719.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00260 08 2087336 2093745 Car08g00260 08 2087336 2093745 ECH