Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00246 ATGGCAAAGAATGTTGGAATTCTCGCTTTTGACATATACTTCCCTCCTAATTGCGAAGCATTGGAGGCTCATGATGGTGCAAGTAAAGGGAAATATACCATTGGACTTGGACAAGATTGCATGTCATTCTGTTCCGAGATTGAAGATGTCATTTCAATGAGTTTGACAGTGGTTAATTCCCTTCTTGAGAAGTATGAGATTGATCCTAAACAAATTGGTCGTCTGGAAGTAGGCAGTGAGACTGTGATAGACAAAAGCAAATCCATCAAGACATTCCTGATGCAGATCTTTGAGAAATCTGGAaacactgacattgaaggcgttgattcaactaatgcatgctatggaggaactgccgcattgttcaaTTGTGTCAATTGGGTGGAGAGCAATTCATGGGATGGACGCTACGGACTTGTTGTCTGCACTGACAGTGCGgtctatgccgaaggtcctgctcgacctaccggaggagccgctgctattgctatgctaattggtcctgatgctcccatttcttttgaaagcaaattgaggggaagtcatatggctcatgcttatgatttttacaaacctgaccttgcgagtgaatatccaGTTGTCGACGGAAAGCTTTCACAAACTTGTTACCTCATGGCCCTTGATTCTTGCTATAAACGTTTCTGTGACAAATATGAGAAACACGAGGGAAAACCATTTTCTCTTTCTGATGCTGATTATTTTGTATTCCACTCTCCTTATAACAAGCTTGTGCAGAAAAGTTTTGCTCGATTGGTCTTCAGTGATTTCTTAAGGAATCCCAGCGGTGCCGATGGGGTTGCCAAAGAAAAACTGGGACCTTTTGCAACTTTATCTGATGACGAGAGCTACCAAAGCCGGGATCTTGAAAAGGCATCCCAGCAAGTTGCAAAGCCTCTATACGATGAGAAGGTACAACCAGCTACTTTGATACCAAAGCAAGTTGGCAACATGTACACCGCATCTCTCTATGCAGCATTTGCATCCCTTATTCACAACAAACATAGCACATTGGAAGGTAGGAGAGTGATATTATTCTCATACGGAAGTGGCTTGACCGCTACAATGTTTTCCTTGCAAATGCGTGAAAGTAAACATCCATTTAGCTTGTCAAACATTGCTCGAGTGATGGATGTTGCTGAAAAGTTGAAGTCAAGACATGAGTTTCCTCCAGAGAAGTTTATTGAAACACTGAAGCTAATGGAGCATAGGTATGGTGCCAAGGATTATGTAACAAGCAAGGACAGTAGCCTTTTATCTCCAGGCACGTTCTATCTCACCGAAGTTGATACCAAGTACCGTAGATTCTATGCGACGAAACCTAGTGAAAGCGGTTTGACAGCAGTCAACGGTGTGATTGCCAATGGTCACTGA 1392 0.3563 MAKNVGILAFDIYFPPNCEALEAHDGASKGKYTIGLGQDCMSFCSEIEDVISMSLTVVNSLLEKYEIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKSGNTDIEGVDSTNACYGGTAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPISFESKLRGSHMAHAYDFYKPDLASEYPVVDGKLSQTCYLMALDSCYKRFCDKYEKHEGKPFSLSDADYFVFHSPYNKLVQKSFARLVFSDFLRNPSGADGVAKEKLGPFATLSDDESYQSRDLEKASQQVAKPLYDEKVQPATLIPKQVGNMYTASLYAAFASLIHNKHSTLEGRRVILFSYGSGLTATMFSLQMRESKHPFSLSNIARVMDVAEKLKSRHEFPPEKFIETLKLMEHRYGAKDYVTSKDSSLLSPGTFYLTEVDTKYRRFYATKPSESGLTAVNGVIANGH 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00246 463 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 448 - -
Car08g00246 463 SUPERFAMILY Thiolase-like 4 169 IPR016039 GO:0016746
Car08g00246 463 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 2 171 IPR013528 -
Car08g00246 463 TIGRFAM HMG-CoA-S_euk: hydroxymethylglutaryl-CoA synthase 2 446 IPR010122 GO:0004421|GO:0008299
Car08g00246 463 SUPERFAMILY Thiolase-like 173 444 IPR016039 GO:0016746
Car08g00246 463 CDD init_cond_enzymes 4 365 - -
Car08g00246 463 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 102 117 IPR000590 GO:0004421|GO:0008299
Car08g00246 463 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 172 446 IPR013746 GO:0004421|GO:0006084|GO:0010142
Car08g00246 463 Gene3D - 1 447 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00246 Car-Chr8 1998203 2002482 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00246 K01641 - gmx:100782595 826.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00246 08 1998203 2002482 Car08g00246 08 1998203 2002482 ECH