Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00244 ATGGATGATGAAGACCTCGCTACAGAGCACATAGTGCCATCTGGTCTCATAAAGGCGATAAAGTTTGATGTTTTAACGGGAGAAGATATAGAGAAGATTTCTGCTTTAGAGATAAATGCACCGACACAGGTCACTTGTTCTGATTTGGGACTTCCAAATTTGTCTTTGGGGTGCACGACATGTGGTTCAAAAGATAGAAAGTCCTGTGAAGGTCATTTTGGAGCAATCAAATTTCCTTTTACCATATTACATCCATACTTCATGGCAGAGATTGCGGAAATCTTGAACAAGATTTGCCCTGCATGTAAATCTATTCGACGTGAATTACGGATCAAGCGTGTTAAATCACTCCTTGGATTCAATCAGCCCAAAGGTTGCAAATATTGTGGAAATGGTATGGGTCGTTATCCTACCATGAAATTCAGAGTTTCATCCAATGATTTCTTCAGGAGAACTGCAATTATTGTTGAAGTAAATGATGTAGCTTTAAAGAAGAAAAGAAATTTGGGGAGAGGATTGCCTGCTGATTATTGGGATTTTATCCTCGGAGATGCTCAACAAGAAGAAAATCATGCAAATAGAATGGTTTTATCACCCGTTCAGGTTGAGAATATTTTGAGTGGAGTTGATTCGAACTTTATTAAAAAGTATATTCCAAGAATGGATTTGGTTGCTCTCAGTTGCTTCTTGGTGGCACCAAATTGTCATCGTGTAACAGAAGTCCCTCATCGACTTTCTGGGGGATATCCATTGAGTTTCGATAACAGAACCAGAGCTTGTAAGAAATTGGTTGATTTCAGGGGTACAGCAAATGAGTTAAGTTCTCGTGTTTTGGATTGCCTGAGGTTCTCCAAGATAAATCCTGATAAAACACCAAGTAATGTATTTACTGAGATCCAACTAAGAAAGGTTGGAGAAAATGCTTGCAATTCTTCTGGTTTAAGATGGATGAAAGATATCGTTCTTGGAAAACGCAATGATAGTTCATTCCGTACTGTGGTTGTCGGCGATCCAGACCTTGAGCTTAGTGAAATTGGTTTACCTTGTCAAATTGCAGAAGGTTTACAGGTTTCTGAGTACGTAAATAGGCAGAATAAGCAAAATTTGCTGTATTGTTGTGAGCTGCGTTTGTTAGAGAAGGGACAGATAAATGTTTGCAGAAAGGGTCGTCCTGTTGTTCTGTTCAAAAAAGAAGACGTGCAGATAGGAGACATATTTTATAGGCCTCTTGTTGATGGGGACAGAGTGTTGATAAACAGGCCTCCTTCCATACATCAACATTCTATGATTGCTCTCACGGTTAGGGTTCTTCCAATATCTTCAGTAGTATCTATTAATCCACTCTGCTGTTCACCTCTGCGTGGGGATTTTGATGGTGATTGCCTTCATGGGTATATTCCACAATCAGTTGGTGCAAGAGTAGAGCTTAATGAGCTGGTTGCTCTGGATAAGCAACTTATTAATGGGCAAAGTGGTAGAAATCTGCTTTCACTTTCTCAGGATAGTTTAACTGCTGCATATTTGCTGTTGGAAGACGGGGTGCTTTTGAATGTTTACCAAATGCAGCAGCTTCAAATGCATTGCAGTAGAAAGTTAATACCTCCTGCAATTGTAAAAGCTCCTTCAAGTAACACCTCGTGTTGGAGTGGCAAGCAATTGTTCAGCATGCTCATGCCTTCTAGTTTTGACTATGCTTTTCCGTCAGATGGCGTTTTTGTTTGTGATGGGGAGCTGATATCTTGTTCTGAGGCTTCTGGGTGGTTACGTGATTCAGACAACAATGTTTTCCAGAGTCTTGTAGAACATTTTCAAGGGAAGACTCTAGACATTTTGCATGGTGCACAGAAAGCTCTTTGTGAGTGGTTGTCTATGACAGGGTTTAGTGTTTCCCTGTCAGATTTGTACCTATCTTCTGATTCTTATGCACGGAAAAACATGATAGAGGAAATCTCCTATGGTTTACAAGAAGCAGAACAGGCTTGTGATTTCAATCAGTTATTGGTAGATTATTGTTGTGATTTTCTTTCAGGAAGTCTTCAAGAGATTGAAAATTTGGTGGCTGTTGACGTGGATTGTCTGAATTATGAAAGGCAAATATCTGCTGCTCTAAGTCAAGCGTCTGTTGATGCTTTCAGACAAGTTTTTCGCAATATTCAGAGTTTGGCTGATAAATATGCGTGCAAGGACAATGCTTTCCTAGCTATGTTTAAGGCTGGAAGCAAGGGTAATTTACTGAAATTAGTGCAACATTCCATGTGCCTTGGACTGCAACATTCTCTGGTTCGTCTACCATACAAAATTCCCCGTAAACTCTCATGTGCTGCTTGGAACAGTCAAAAGGGAATGCAAATTTTTTCTGATACTGTTGAACCTGTCCAGTCTTACATTCCATATGCTGTGGTTGAAAGCTCTTTTCTTACTGGGTTGAATCCACTAGAATGTTTTGTTCATTCAGTGACAAATCGTGATAGCTCTTTCAGTGACAATGCAGACCTTCCTGGGACGTTGACCCGTAGACTTATGTTCTTCATGCGTGATATGTATGATGCATATGATGGAACAGTGAGAAATTTATATGGTAATCAACTTATTCAGTTTTCTTATGATGCTGAAGAGGATTCATCTTGTGATAGCCATTTCCGAGAGGATACTATAGGTGGTGAACCGGTTGGAACACTTTCTGCTTGTGCGGTTTCTGAGGCTGCTTACAGTGCTTTGAGTCAACCTATTAGTCTACTTGAAGCATCACCTTTGCTGAATTTAAAATATGTTCTGGAGTGTGGTTCAAGGAAGAGAGGTGGTGATCAGACTGTGTCTTTATTTTTGTCTGAGAAAATTGGTAAACAGAGAAATGGGTTTGAGTATGCAGCACTAGAAGTTAAGAATTATTTGGAAAGATTGATGTTCTCAGACATTGTTTCTACTGTCATGATAATATTCACTCCTCAGTCTCGCAGTCTAGAAAAATACAGTCCTTGGGTTTGCCATTTTCATTTAGACAAGGAAAATGTAACTAGAAGAAATTTAGAAGTGCATTCTATCATTGACTCTCTTTACCAGCGATATGACTCCTTAAGAAAAGGCTCAAAAGTCACTCTTCCCAACTTGAAAATATCAACCAAGAAATGTTCTGTACATTACATGGCTAAGGAAGGTGGAGAAACCTCTGTTGATAAGGAAATCGATGGTGAAGATTGCATCACTGTTACAATTGTCGAAAATTATATGAATTCTGTGCAACTGGATGTGGTTCGCAATATGATGATACCTTTTCTTCTGCGAACAGCTATAAAAGGAATTTTTGAGATCAAGAAGGTTGACATTCTCTGGAAGGATCTGTCAAAAGGATCGAAGTCTTATAATGGTTCTTCCGGTGAACTATACTTGAGGGTTACTATGTCCAGCGACAGTGACAGAGGTACATTCTGGGGTGCACTGATAAATCATTGTCACAGGATAATGCCGATGATTGACTGGGCACGAAGTCATCCGGATAACATTCATCATTTCTGCTCAGCCTTTGGAATTGATGCTGGGTGGCAGCATTTTCTACATAATTTGTCATCTGCAACATCTGATACTGGCACGTCAATTCTTCCCAAGCATCTGCGTCTTGTTGCCAATAGTCTTTCGGCTAGTGGAGAGTTTGTGGGCTTAAATTCTAAAGGCATGGCACGGCAAAGAAATCATGCGTCTGTTTCATCACCCTTTGTGCAAGCATGCTTTTCTAATCCCGGTAGTACCTTTTTAAAAGCTGCTAAGTCTGGGGTCGTTGATAATCTCCAGGGCACTCTAGATGGATTGGCTTGGGGAAATTGTCTGTCCATGGGGACAAGTGGACAGTTTGATGTCATGTACTCAGAGAAGGTACAAGAGCTTGCTAAGTCTGTAGATGTGTATGACCTGCTAGAAACCAGTTTTGACCAGCTAGACCAAGAGATTAATACCTCTCAATCTAACAACTATTCATCCGACAAATGCAATTCTCAGTTTAGACATAAAAAAGGTCGTTATGCCCCAAAAGAGCCGAAGCAGTGGAAAAGTGTTATAAGAAATTTCATGACTGCAAATGATATTCAGAAGCTCACTTCTGCATCAAGGTTCATACTGAACAAGTATCCTATCGATCAGATACTAAGTGAGAGAGACAAGTTAACAATAATGAAGGTTTTGCATTTTCATCCTCGTAGAAATGAAAAGTTAGGCTCTGGACCACAACATATAAAGGTTGGATGGCATCCTAAGTTTACAGATAGTCGATGCTTTTTTATAATTCGAACGGATGGGACTGTTGAAGATTTTTCATACCGCAAATGCATTCTTGGTGCCCTTGATGTTGTTGATCCGGAAAAGTCAAAGATCCAGAAGAAGAAATGGTCGGGACATGATGACACGGAACCTAAATTTTTGCATGTCCAAGCATAA 4425 0.3991 MDDEDLATEHIVPSGLIKAIKFDVLTGEDIEKISALEINAPTQVTCSDLGLPNLSLGCTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEILNKICPACKSIRRELRIKRVKSLLGFNQPKGCKYCGNGMGRYPTMKFRVSSNDFFRRTAIIVEVNDVALKKKRNLGRGLPADYWDFILGDAQQEENHANRMVLSPVQVENILSGVDSNFIKKYIPRMDLVALSCFLVAPNCHRVTEVPHRLSGGYPLSFDNRTRACKKLVDFRGTANELSSRVLDCLRFSKINPDKTPSNVFTEIQLRKVGENACNSSGLRWMKDIVLGKRNDSSFRTVVVGDPDLELSEIGLPCQIAEGLQVSEYVNRQNKQNLLYCCELRLLEKGQINVCRKGRPVVLFKKEDVQIGDIFYRPLVDGDRVLINRPPSIHQHSMIALTVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVGARVELNELVALDKQLINGQSGRNLLSLSQDSLTAAYLLLEDGVLLNVYQMQQLQMHCSRKLIPPAIVKAPSSNTSCWSGKQLFSMLMPSSFDYAFPSDGVFVCDGELISCSEASGWLRDSDNNVFQSLVEHFQGKTLDILHGAQKALCEWLSMTGFSVSLSDLYLSSDSYARKNMIEEISYGLQEAEQACDFNQLLVDYCCDFLSGSLQEIENLVAVDVDCLNYERQISAALSQASVDAFRQVFRNIQSLADKYACKDNAFLAMFKAGSKGNLLKLVQHSMCLGLQHSLVRLPYKIPRKLSCAAWNSQKGMQIFSDTVEPVQSYIPYAVVESSFLTGLNPLECFVHSVTNRDSSFSDNADLPGTLTRRLMFFMRDMYDAYDGTVRNLYGNQLIQFSYDAEEDSSCDSHFREDTIGGEPVGTLSACAVSEAAYSALSQPISLLEASPLLNLKYVLECGSRKRGGDQTVSLFLSEKIGKQRNGFEYAALEVKNYLERLMFSDIVSTVMIIFTPQSRSLEKYSPWVCHFHLDKENVTRRNLEVHSIIDSLYQRYDSLRKGSKVTLPNLKISTKKCSVHYMAKEGGETSVDKEIDGEDCITVTIVENYMNSVQLDVVRNMMIPFLLRTAIKGIFEIKKVDILWKDLSKGSKSYNGSSGELYLRVTMSSDSDRGTFWGALINHCHRIMPMIDWARSHPDNIHHFCSAFGIDAGWQHFLHNLSSATSDTGTSILPKHLRLVANSLSASGEFVGLNSKGMARQRNHASVSSPFVQACFSNPGSTFLKAAKSGVVDNLQGTLDGLAWGNCLSMGTSGQFDVMYSEKVQELAKSVDVYDLLETSFDQLDQEINTSQSNNYSSDKCNSQFRHKKGRYAPKEPKQWKSVIRNFMTANDIQKLTSASRFILNKYPIDQILSERDKLTIMKVLHFHPRRNEKLGSGPQHIKVGWHPKFTDSRCFFIIRTDGTVEDFSYRKCILGALDVVDPEKSKIQKKKWSGHDDTEPKFLHVQA 1474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00244 1474 Gene3D - 1348 1442 - -
Car08g00244 1474 Gene3D RNA polymerase ii 356 408 - -
Car08g00244 1474 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 14 1288 - -
Car08g00244 1474 PANTHER DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 7 1364 - -
Car08g00244 1474 SMART rpolaneu7 222 510 IPR006592 GO:0003677|GO:0003899|GO:0006351
Car08g00244 1474 Pfam RNA polymerase Rpb1, domain 2 323 480 IPR000722 GO:0003677|GO:0003899|GO:0006351
Car08g00244 1474 Gene3D - 320 489 - -
Car08g00244 1474 Pfam RNA polymerase Rpb1, domain 3 486 634 IPR007066 GO:0003677|GO:0003899|GO:0006351
Car08g00244 1474 Gene3D - 644 809 IPR038120 -
Car08g00244 1474 Gene3D RNA polymerase Rpb1, domain 3 490 636 IPR042102 -
Car08g00244 1474 CDD RNAP_IV_RPD1_N 25 856 IPR040403 -
Car08g00244 1474 Pfam Protein of unknown function (DUF3223) 1369 1440 - -
Car08g00244 1474 PANTHER DNA-DIRECTED RNA POLYMERASE 7 1364 IPR045867 GO:0003899|GO:0006351
Car08g00244 1474 Gene3D RNA polymerase II, clamp domain 9 127 IPR044893 -
Car08g00244 1474 Pfam RNA polymerase Rpb1, domain 4 702 761 IPR007083 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00244 Car-Chr8 1965446 1983537 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00244 K16250 - gmx:100796185 2220.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00244 08 1965446 1983537 Car08g00244 08 1965446 1983537 ECH