Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00203 ATGTCATTTACAGTTAGTTTATTGAGTTGGGCTGCTGTTGAATATGAAAGTGAGATTTCTTCAGTGAACCAGCTTGGTTACCTTCATAGTGCTATTCGTTGGGGTGCAGATTTCATATTTCAATCTCATACTTCCCCAACCACACTCTTTACACAGGCATATTTCTATATATTATATGGAAACGCGGATCATCAATGTTGGGAGCGACCAGAAGACATGGATACACCGAGAACAGTTTATAAGATTGATGCTAATTCCCCTGGAACTGAGgctgcagctgaggctgctgctgctctttctgctgctTCAATTGTCTTCAAAAAAACAGACGTCAATTATTCTTCAAAATTATTAAAACAGTCAAAATCTTTGTTTGATTTTGCTGACAAGTATAGAGGATCTTACTCGGCTTCTTGTCCATTCTATTGTTCCTACTCTGGCTATCAGGATGAACTGTTATGGGCTGCTTCTTGGCTATACAAAGCTAGTGGAGAAAGCAAGTACTTGAAGTACATCATAGACAACCAAGGTTGGAGCCAAACAGGGTCTGAGTTCAGCTGGGATAACAAATTTGTTGGAGCTCAAACATTACTAACACAGGAATTTTATGATGGGAAGAAGGAATTATCCAAGATTCAGAGTGATGCTGAGTCATTTATATGTGGATTGATGCCAGGAAGTAGCTCTGTACAGATTAAAACAACTCCTGGTGGGCTTTTGTATACTAGAGATAGTAGTAATTTGCAATATACCACAACTTCAACCATGGTGCTATTCATTTTCTCCAAAATTCTAAACAAAAATCATATTGATGGAATCCATTGTGGCTCTTCTCATTTCTCCCCCTCTGAAATTAGTGCCTTTGCAAAATCACAGGTGGACTACATTCTAGGAAAGAATCCTATGAAGATGTCATACATGGTAGGATATGGGAGTAAATACCCAAAACAATTACACCACAGAGGTTCTTCCATCCCTTCAATCAAAGTTCACCCAACCAAAGTGGGTTGCAATGATGGTCACTCAGATTATTTCTCTTCCTCTAATCCAAATCCAAATATTCATGTGGGTGCTATTGTAGGAGGCCCTGATTCTAATGACCAATTCAGTGATGCAAGATCTGATTACTCTCACTCTGAGCCTACCACTTATATGAATGCTGCTTTTATAGGTTCTGTTGCAGCTTTGCTTGGTGAAACTAATATTAGGACTCTGCAATTTTCCCAAATTGGTCGTATGAAGGCTAAGGAAACTAATTAG 1260 0.3738 MSFTVSLLSWAAVEYESEISSVNQLGYLHSAIRWGADFIFQSHTSPTTLFTQAYFYILYGNADHQCWERPEDMDTPRTVYKIDANSPGTEAAAEAAAALSAASIVFKKTDVNYSSKLLKQSKSLFDFADKYRGSYSASCPFYCSYSGYQDELLWAASWLYKASGESKYLKYIIDNQGWSQTGSEFSWDNKFVGAQTLLTQEFYDGKKELSKIQSDAESFICGLMPGSSSVQIKTTPGGLLYTRDSSNLQYTTTSTMVLFIFSKILNKNHIDGIHCGSSHFSPSEISAFAKSQVDYILGKNPMKMSYMVGYGSKYPKQLHHRGSSIPSIKVHPTKVGCNDGHSDYFSSSNPNPNIHVGAIVGGPDSNDQFSDARSDYSHSEPTTYMNAAFIGSVAALLGETNIRTLQFSQIGRMKAKETN 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00203 419 PANTHER ENDO-1,4-BETA-GLUCANASE 1 403 - -
Car08g00203 419 SUPERFAMILY Six-hairpin glycosidases 1 399 IPR008928 GO:0005975
Car08g00203 419 Gene3D - 1 407 IPR012341 GO:0005975
Car08g00203 419 PANTHER ENDOGLUCANASE 18-RELATED 1 403 - -
Car08g00203 419 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 295 321 IPR018221 -
Car08g00203 419 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 369 387 IPR033126 -
Car08g00203 419 Pfam Glycosyl hydrolase family 9 1 391 IPR001701 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00203 Car-Chr8 1622963 1626993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00203 1 397 Glycoside Hydrolase AT4G23560 68.010 0.0 544
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00203 - - cam:101489803 818.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00203 08 1622963 1626993 Car08g00203 08 1622963 1626993 ECH