Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00201 ATGTATCAAAGAAAGACAGATGAACTATCCCTAGCAGCTGTAATGGTTTTGATGATCTCTGTGAAGAATGCTTGTAAAATTGGATGGTTCCAGAAGAAAGAATCAGAAGAACTCTTAACTATTTCTGACGAGATAGGAAAGATCTACTGCACCCTGGGAAATGTAAGTACCGGTCCTAGTTCTTGCCACTCTGCAATGTTAACTATAATGGAAAGGTTCTATCCAAAACTCAAATTGGGTCCAATAATTGTATCAATCGAAGCCAAGCCTGGATATGGAGCTGCTGCTGTTGACTTCCATATCACAAAGAATAATGTTCTATCAGACAAAAAAATTTGGTTATTGGTGGCACAAACTGATAACATTGAGACATCTGCATGCCTCATCAGCCCTCAGCAAGTGAATTTTCTCCTAAATGGAAAAGGAATTGACACAAGAACTAACATTCGAATGGATCCTGGACCACAAATGCCCACTAGTGTGACTAGTATGCTTAAATTTGGGACAAATCTTCTTCAAGCTGTGGGTCAGTTCAATGGTAATTATATTATACTTGTTGCCTATATGAATGCTGCACCCTTGCCTGAGCATCCAGTTCTTCCACCAGATTATGTTCAGCCTGCCGTTACTTCTGTCGACTCAGATATTATCGAGGGGGCATCCCGGATCTCGCTTAATTGTCCGATAAGCTTTACGCGTATCAAGACTCCAGTTAAAGGGCATTCATGCAAACATTTCCAGTGCTTCGACTTTGACAACTTCACTAACATAAATTCTAAGAGGCCATCCTGGCGCTGCCCCCATTGCAATCAGTATGTCTGCTACACAGATATTCGTCTTGACAGAAAAATGATTGAGATCCTGAAGAATGTTGGCGAGAACGTTTTGGAAGTGATTGTCCATGCTGATGGATCGTGGAAGGCAGTCTTGCAAAATGACCATGAGGTGGATAAGATACAGAATAAGGCCGCTTATCGTGAAAAGGAACAGACTGAACAACAAGAAACTACGTGCTCCCCTAATACCGTTCCTGATGTTTTGGACCTCACCGAAGATAATTATTTGGACATAATGGACACTTGTGAAACTACAGATAGAAAGCCTTTCCAGGCCTCTGTTTCTTCTGGCGTTCAAATAGAAGATGACTTTTGGGCTGGATTTTATATGAACAACAGTGGGTCTGATGCCCCTACAGTTGGTATCGACCATCCCGTTCTGGCTGATGCTGTTTCTCCGCCATTTAATCAGGAAGCCGAGGGTCATGACATTATTCCTGCCATAAATTCTGCCATGCATAACCAGTTTTTTCCATCAAATAATTTGCAGCTGATGAATTATATGAATTCATCTAATGAATATGGGAGTTCATCCGTGTCACCGAGACATATTCAAAGGACTCCAGTAGCTGTTCAGGCCCTCCCAATCCAATCTCAGACATTAGGATCACAGCAAAATTCAGTAACTAATTTGGATTCCTTGATTACCAGCAGTTTGTCTGCTACTCCTCATGTTTCTTTGTCCAACCCCGCCTCCGCAGATTCTTACAATGCCATACTGAGTGACCTAGAAAGACAGCAACTATTTTCTCAAGCCCCACTGAATATGTCTCAGGTCTCAGCAGCAACACAGGTTTGA 1635 0.4202 MYQRKTDELSLAAVMVLMISVKNACKIGWFQKKESEELLTISDEIGKIYCTLGNVSTGPSSCHSAMLTIMERFYPKLKLGPIIVSIEAKPGYGAAAVDFHITKNNVLSDKKIWLLVAQTDNIETSACLISPQQVNFLLNGKGIDTRTNIRMDPGPQMPTSVTSMLKFGTNLLQAVGQFNGNYIILVAYMNAAPLPEHPVLPPDYVQPAVTSVDSDIIEGASRISLNCPISFTRIKTPVKGHSCKHFQCFDFDNFTNINSKRPSWRCPHCNQYVCYTDIRLDRKMIEILKNVGENVLEVIVHADGSWKAVLQNDHEVDKIQNKAAYREKEQTEQQETTCSPNTVPDVLDLTEDNYLDIMDTCETTDRKPFQASVSSGVQIEDDFWAGFYMNNSGSDAPTVGIDHPVLADAVSPPFNQEAEGHDIIPAINSAMHNQFFPSNNLQLMNYMNSSNEYGSSSVSPRHIQRTPVAVQALPIQSQTLGSQQNSVTNLDSLITSSLSATPHVSLSNPASADSYNAILSDLERQQLFSQAPLNMSQVSAATQV 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00201 544 Pfam MIZ/SP-RING zinc finger 223 271 IPR004181 GO:0008270
Car08g00201 544 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 309 IPR013083 -
Car08g00201 544 PANTHER E4 SUMO-PROTEIN LIGASE PIAL2-LIKE 6 371 - -
Car08g00201 544 SUPERFAMILY RING/U-box 224 299 - -
Car08g00201 544 CDD SP-RING_PIAS_like 224 271 - -
Car08g00201 544 ProSiteProfiles Zinc finger SP-RING-type profile. 212 293 IPR004181 GO:0008270
Car08g00201 544 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 6 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00201 Car-Chr8 1598672 1606809 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00201 K04706 - gmx:100780539 716.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00201 08 1598672 1606809 Car08g00201 08 1598672 1606809 ECH