Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00187 ATGTCTTCTTCCAAAGACGCAGACCCAAACCTAGGTTTTCTAACTCGAAAGGATACAGAGGTGAAGCTTCCACGACCAACCAGGGTTAAAAACAAAACCCCCGCTCCCATTCAAATCACCGCCGAGCAGATTCTTCGCGAAGCTAGAGAACGTCAAGAAGCCGAGATCCGCCCTCCCAAACAGAAAATCACCGATCCAACAGAGCTCGGCGAGTACCGTCTCCGAAAACGAAAGGAATTCGAGGATTTAATCCGGCGAGTTCGATGGAACATTAGTGTTTGGATTAAATACGCACAGTGGGAGGAATCGCAGAAAGACTTCAAACGCGCGCGTTCCGTTTGGGAAAGAGCTTTAGAAGTTGATTACAAGAATCACACGCTATGGTTGAAATACGCGGAGGTGGAGATGAAGAACAAGTTCGTGAACCATGCCAGGAACGTTTGGGATCGTGCTGTTACTCTTTTGCCGCGAGTGGATCAGTTATGGTACAAGTATATTCACATGGAGGAGATGCTCGGAAATGTCGCCGGAGCGAGACAGGTTTTCGAGAGGTGGATGAAATGGATGCCGGATCAGCAAGGATGGCTCTCTTACATTAAATTTGAACTTAGGTACAATGAAATTGAACGAGCTAGGGGGATTTTCGAGCGATTTGTTCAGTCTCACCCTAGGGTTGGGGCTTGGATACGTTATGCCAAGTTTGAAATGAAGAATGGTGAGGTTCCTAAGGCGAGGAATGTTTATGAAAGAGCGGTGGAGAAGCTTGCAGACGACGAAGAAGCTGAACAGCTTTTTGTGGCGTTTGCTGAGTTTGAGGAAAGGTGCAAGGAGGCGGAGCGTGCAAGGTGTATATATAAATTTGCACTTGATCATATTCCTAAGGGAAGGGCGGAAGATTTGTATCGCAAGTTTGTGGCGTTTGAAAAACAGTATGGTGATAGGGAAGGGATTGAGGATGCTATTGTTGGGAAGAGAAGGTTTCAGTATGAAGATGAAGTGAGGAAAAATCCTTTGAATTATGATTCTTGGTTTGACTATATAAGATTGGAAGAAAGTGTGGGGAATAAGGAAAGAACTAGGGAGGTTTATGAGAGAGCTATAGCTAATGTTCCTCCAGCTGAGGAGAAGCGATATTGGCAGCGATATATTTATTTGTGGATTAATTATGCACTCTATGAAGAGCTTGATGCTGGCGATATGGAGCGAACAAGAGATGTGTACAGGGAGTGTCTCAACCAGATACCTCACCATAAGTTTTCATTTGCAAAGATATGGCTTCTAGCAGCCCAATTTGAAATACGGCAGCTGAATCTCAAGGGTGCTCGTCAAATATTAGGAAATGCTATTGGAAAGGCTCCTAAAGATAAGATATTTAAGAAGTATATAGAGATAGAACTGCAACTTGGTAATATAGATCGGTGCAGAAAACTCTATGAAAAGTATCTGGAGTGGTCACCTGAAAATTGCTATGCATGGAGCAAGTATGCAGAGTTAGAGAGATCTTTATCTGAGACCGAAAGAGCTAGAGCAATATTTGAGCTTGCAATTGCCCAACCAGCATTGGATATGCCTGAGTTGTTGTGGAAGGCATACATTGACTTTGAAACTGCTGAGTGTGAATTTGAGAGAGCAAGGGTACTTTATGAAAGGCTTCTTGATCGAACAAAGCACTTGAAGGTATGGATAAGCTATGCAGAGTTTGAAGCAACAGCAATTGATAAGGAGAGTTTAGACTTGTCAGAAGAAGAAAAGAAGCAATGCATTCAGCGTGCCAGAAGGGTGTTTGAGGAAGCTCTGAACCACTTCAGATCATCAGCTCCAGATTTAAAAGAAGAAAGGGCAATGCTTCTAGAGAAATGGCTCAACTTGGAGGCTTCATCTGGGGAGCTAGGTGATGTTAGCTTAGTCCAGTCTAAGCTTCCCAAGAAGCTCAAAAAGAGACGGCAAGTTACTACTGAAGACGGTTCTTCTAGAATTGAAGAATTTATCGACTATCTATTCCCTGAGGAAACTCAGACGACCAATCTCAAGATTTTGGAAGCTGCTTACAAATGGAAGAAGCAAAAATTGTCTACTGGTGATGATTAA 2088 0.4334 MSSSKDADPNLGFLTRKDTEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPKQKITDPTELGEYRLRKRKEFEDLIRRVRWNISVWIKYAQWEESQKDFKRARSVWERALEVDYKNHTLWLKYAEVEMKNKFVNHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQVFERWMKWMPDQQGWLSYIKFELRYNEIERARGIFERFVQSHPRVGAWIRYAKFEMKNGEVPKARNVYERAVEKLADDEEAEQLFVAFAEFEERCKEAERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPLNYDSWFDYIRLEESVGNKERTREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYRECLNQIPHHKFSFAKIWLLAAQFEIRQLNLKGARQILGNAIGKAPKDKIFKKYIEIELQLGNIDRCRKLYEKYLEWSPENCYAWSKYAELERSLSETERARAIFELAIAQPALDMPELLWKAYIDFETAECEFERARVLYERLLDRTKHLKVWISYAEFEATAIDKESLDLSEEEKKQCIQRARRVFEEALNHFRSSAPDLKEERAMLLEKWLNLEASSGELGDVSLVQSKLPKKLKKRRQVTTEDGSSRIEEFIDYLFPEETQTTNLKILEAAYKWKKQKLSTGDD 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00187 695 SUPERFAMILY TPR-like 267 535 IPR011990 GO:0005515
Car08g00187 695 Gene3D Tetratricopeptide repeat domain 123 322 IPR011990 GO:0005515
Car08g00187 695 Gene3D Tetratricopeptide repeat domain 524 629 IPR011990 GO:0005515
Car08g00187 695 Gene3D Tetratricopeptide repeat domain 323 523 IPR011990 GO:0005515
Car08g00187 695 MobiDBLite consensus disorder prediction 11 27 - -
Car08g00187 695 PANTHER PRE-MRNA SPLICING FACTOR 22 692 IPR045075 GO:0000398
Car08g00187 695 MobiDBLite consensus disorder prediction 1 36 - -
Car08g00187 695 Pfam HAT (Half-A-TPR) repeat 207 235 IPR003107 GO:0006396
Car08g00187 695 SMART hat_new_1 105 137 IPR003107 GO:0006396
Car08g00187 695 SMART hat_new_1 539 570 IPR003107 GO:0006396
Car08g00187 695 SMART hat_new_1 71 103 IPR003107 GO:0006396
Car08g00187 695 SMART hat_new_1 503 537 IPR003107 GO:0006396
Car08g00187 695 SMART hat_new_1 173 204 IPR003107 GO:0006396
Car08g00187 695 SMART hat_new_1 276 310 IPR003107 GO:0006396
Car08g00187 695 SMART hat_new_1 586 619 IPR003107 GO:0006396
Car08g00187 695 SMART hat_new_1 354 388 IPR003107 GO:0006396
Car08g00187 695 SMART hat_new_1 436 467 IPR003107 GO:0006396
Car08g00187 695 SMART hat_new_1 469 501 IPR003107 GO:0006396
Car08g00187 695 SMART hat_new_1 398 434 IPR003107 GO:0006396
Car08g00187 695 SMART hat_new_1 139 171 IPR003107 GO:0006396
Car08g00187 695 SMART hat_new_1 206 237 IPR003107 GO:0006396
Car08g00187 695 SMART hat_new_1 239 274 IPR003107 GO:0006396
Car08g00187 695 SMART hat_new_1 320 352 IPR003107 GO:0006396
Car08g00187 695 SUPERFAMILY TPR-like 81 205 IPR011990 GO:0005515
Car08g00187 695 SUPERFAMILY TPR-like 526 626 IPR011990 GO:0005515
Car08g00187 695 SUPERFAMILY TPR-like 194 263 IPR011990 GO:0005515
Car08g00187 695 Coils Coil 261 281 - -
Car08g00187 695 PANTHER - 22 692 - -
Car08g00187 695 Coils Coil 495 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00187 Car-Chr8 1466353 1471244 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00187 K12869 - gmx:100811745 1300.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00187 08 1466353 1471244 Car08g00187 08 1466353 1471244 ECH