Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00178 ATGGATCCTGAAAATCCGAAATCAGATGTAGAAATGGACAGTGCTTTTGACGATGAAGGTGAACCGGCCCTTACAATCGGCGAGTACCTTGACGAAGTTGAGGAACGGGAGCTGGAAGCTGATTTAGTTTTGGGAGGTGATGATGGCAAGGAGTGTACCTATAGCAAAGGTTACATGAAAAGGCAGGCAATTTTCTCTTGCATCACCTGCACCCCTGATGGGAATGCTGGAGTTTGTACTGCTTGCTCATTGTCTTGCCACGATGGTCATCAGATTGTGGAACTATGGACAAAAAGAAACTTCAGGTGTGATTGTGGAAATTCAAAGTTTGGTGAATTTTACTGCAAGATTTCCCCAAATAAAGATGTTGAGAATGTTGAGAATTTGTACAATCACAACTTTAAAGGTTCATATTGCACATGTGGCCGCCCTTATCCAGATCCAGATGCTGAAGAGCAAATAGAGATGATACAGTGTTGTCTGTGTGAGGACTGGTTTCACGAGGAGCATCTTGGTCTTGAATCTTCTGATGAGATTCCCAGAGATGATGAAGGTGAGCCGCTTTATGAAGATTTCATATGTAAGGCATGCTCTGAAGTATGTTTCTTTCTGAAATTATATCCTGAAGTAATATGGGTGGCTGGGAAGCAGCCAAATGCTACTGTTCAAGTTAGTAGCAAGGACAAGGGTATTTTGGAAGACAAGCCTTCAACTTGTGGGTCTGAAAAGCCATTGGGTGATACTTCATATAATTCTCCTAAAATTGATGAGGCAAAAGCTTCTGTTGATTCTGAATCTATATCTGATGGGAAGGTTCTGCCTCAGGGAGGAAGTTGTAATAGCAGTACAGCTGTAAATAAATGCACAGAAGGCACCGATCTGCATGTTGATTGTCTCCTTGGTGTGAACATCATTGCTGCTTCCCCAGTTATACATGGTAAACCACTGTTCCTTTCCAAGAGTTGGCGAGATGCTCTATGCAAATGCAACAATTGTGTGGCGTATTACCATCAGAAAAGGATTGCTTTTCTACTTGACAAGGATGACTCAATTGTGGAGTATGAGAAAATGGCCAAGCAAAAAAGAGAAGAAAAGTTGCAGCAACAGGAGGGTGCTGAGTTAAGTTTCTTTAGTAAACTTGGACATGTAGAGAAAGTCGAGATCTTGAAGGGCATTGAAGAGATGAAGGATGGACTTCGTACTTTCCTGGAGTCCGCTGACTCGTCCAAGCCAATTACTGCTGCTGATGTCCATCAGTTTTTTGATGACATTAAGAATAAGCGTCGCCGCGTACAGTGA 1299 0.4249 MDPENPKSDVEMDSAFDDEGEPALTIGEYLDEVEERELEADLVLGGDDGKECTYSKGYMKRQAIFSCITCTPDGNAGVCTACSLSCHDGHQIVELWTKRNFRCDCGNSKFGEFYCKISPNKDVENVENLYNHNFKGSYCTCGRPYPDPDAEEQIEMIQCCLCEDWFHEEHLGLESSDEIPRDDEGEPLYEDFICKACSEVCFFLKLYPEVIWVAGKQPNATVQVSSKDKGILEDKPSTCGSEKPLGDTSYNSPKIDEAKASVDSESISDGKVLPQGGSCNSSTAVNKCTEGTDLHVDCLLGVNIIAASPVIHGKPLFLSKSWRDALCKCNNCVAYYHQKRIAFLLDKDDSIVEYEKMAKQKREEKLQQQEGAELSFFSKLGHVEKVEILKGIEEMKDGLRTFLESADSSKPITAADVHQFFDDIKNKRRRVQ 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00178 432 SMART push_1 50 119 IPR003126 GO:0008270
Car08g00178 432 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UBR7 12 431 IPR040204 GO:0008270|GO:0061630
Car08g00178 432 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UBR7-RELATED 12 431 - -
Car08g00178 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 200 IPR013083 -
Car08g00178 432 Pfam Putative zinc finger in N-recognin (UBR box) 52 116 IPR003126 GO:0008270
Car08g00178 432 MobiDBLite consensus disorder prediction 1 22 - -
Car08g00178 432 ProSiteProfiles Zinc finger UBR-type profile. 50 120 IPR003126 GO:0008270
Car08g00178 432 CDD PHD_UBR7 138 197 - -
Car08g00178 432 SUPERFAMILY FYVE/PHD zinc finger 126 207 IPR011011 -
Car08g00178 432 SMART PHD_3 138 198 IPR001965 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00178 K11979 - gmx:100817441 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00178 08 1375340 1379737 Car08g00178 08 1375340 1379737 ECH