Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00033 ATGGCGATGGAGAGAAGTGATGATGTTACCGTATCTCCTCATCCATGGCAATCTTACAACACTGTTTACACAACCGCCAAAGCAGGAATGGAGGGTGTTGACAAGGAAAAAGTACAAAGGATTGTTTACGAAATGAGCAAAGGATCCAAATATTTTCAGAACGAGGAACGAAAAGAGACTTTTATCAGACACAAAGTTGACAACATGCGACTTCAGTTTGCAAAGCTTACACAAGCTGATTTATTCCATTACCAGAAGGTTGCTGATAGAAGGATTCTTGAGCTGGAAGCTTCGCGTGATCTTTCAAGGATTTGGTTACATGTAGATATGGATGCTTTCTATGCTGCGGTCGAGACTTTAAGTAACCCCACGTTAAAGGGAAGACCAATGGCTGTTGGTAGCATGTCTATGATATCCACTGCCAATTATGAGGCCAGGAAATTTGGGGTTCGTTCTGCCATGCCTGGGTTCATTGCACGGAAGCTATGTCCAGAGTTAATCTTTGTCCCAACAGATTTTAAGAAGTATACTTATTACAGTGATTTGACCAGAAAAGTTTTTCAGAGGTATGATCCCAATTTCATTGCTGGTAGCCTGGATGAAGCATACCTTGATATAACTGAAGTTTGTAGAGAAAGGAATGTCAAAAGTGAAGAAATTGCTCAAGAACTAAGAGACAGTGTTTATGAAGAGACTGGTGGTCTCACGTGTAGTGCTGGAGTGGCACCAAATCGCTTACTTGCTAAGGTTTGCTCAGACATAAACAAGCCTAATGGACAGTATGTTTTGCCAAATGACCGCTTGGCTGTTATGACTTTCATATCCTCCCTTCCTATCAGAAAGATTGGGGGCATAGGTAAGGTCACTGAACATATTTTGAAGGAAGTTTTTGGAATAAACACGTGTGAGCAGATGCTGGATAAGGGTAGCTACCTGTGTGCTCTTTTTTCTCCATCAACGGCAGATTTTTTTTACTCTGTGGGTTTAGGTCTTGGAAAGACGGATTCTCCTCAAGTAAGGTTTCGGAAAAGTATTAGCAATGAGAGGACATTTTCTGCCACTGAGGATGAAGTGCTGATGCATAAAAAATTGGCGGAGCTTGCTGAAATGCTGTCTGCAGACATGCAAAAAGAGGGTCTGCATGGGCGAACATTGACTCTTAAACTTAAAACTGCTTCTTTTGAGGTTCGGAATAGAGCTATGACTTTACAAAACTACATCAGCTCGAGTGAGGATATTTTGAAGCATGCATCAAAGTTGCTAAAAGCTGAACTTCCTGTTTCAGTAAGATTAATAGgtcttagagtatcacagtttaatggagaaaagagtggtgctacagctgatcctacacagaagactattaccaatttcatcacttcaggagaagccaataggaataatagttctttttcagatgttacagatcatgaatttgtcagtgatacagaaactgatctttccattgatggccaacgcacatgtcagcttgattgcagagatccttttgatggtaatcattcattagatgtgaattacCAAAGCTGCACTCTTTGGAAAAATGATGGTGCGGAGAAGGTGCAAACTTCTGACAATGATGCTGAAAGTTATTACCACCATGGATGTACAGAGGTGCTGGGATCAACATCTTTCCAGGGACAGTTTGAGGGCAAGAATGTGAATAGTGGGTCTAATTTTCTGGAGAATGATAGACTTGATTCTTCTTGTCAGGAAGCAGTAATGTTGTGGTTGAATGACTATAAATGTTCACTCTGTGGAATAGAACTTCCTCCAAGTTTTGTTGAGGAAAGATTAGAGCATTCTGATTTTCATTTTGCTGAAAAGCTTCAAAAGGAAGAATCTAGTATTCACCAAGCACCTGTTTTGATATCGAGTCAAAGTCGGGATCAGAAGCTCCGAAACAATAGACAAAGCAAATCCAAGAAGCCAAAGTTGTCGCAGAAAGAGGGCAGCTATACACCCATTGATTATTTTTTTGTTAAAGAGTAA 2010 0.3587 MAMERSDDVTVSPHPWQSYNTVYTTAKAGMEGVDKEKVQRIVYEMSKGSKYFQNEERKETFIRHKVDNMRLQFAKLTQADLFHYQKVADRRILELEASRDLSRIWLHVDMDAFYAAVETLSNPTLKGRPMAVGSMSMISTANYEARKFGVRSAMPGFIARKLCPELIFVPTDFKKYTYYSDLTRKVFQRYDPNFIAGSLDEAYLDITEVCRERNVKSEEIAQELRDSVYEETGGLTCSAGVAPNRLLAKVCSDINKPNGQYVLPNDRLAVMTFISSLPIRKIGGIGKVTEHILKEVFGINTCEQMLDKGSYLCALFSPSTADFFYSVGLGLGKTDSPQVRFRKSISNERTFSATEDEVLMHKKLAELAEMLSADMQKEGLHGRTLTLKLKTASFEVRNRAMTLQNYISSSEDILKHASKLLKAELPVSVRLIGLRVSQFNGEKSGATADPTQKTITNFITSGEANRNNSSFSDVTDHEFVSDTETDLSIDGQRTCQLDCRDPFDGNHSLDVNYQSCTLWKNDGAEKVQTSDNDAESYYHHGCTEVLGSTSFQGQFEGKNVNSGSNFLENDRLDSSCQEAVMLWLNDYKCSLCGIELPPSFVEERLEHSDFHFAEKLQKEESSIHQAPVLISSQSRDQKLRNNRQSKSKKPKLSQKEGSYTPIDYFFVKE 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00033 669 ProSiteProfiles UmuC domain profile. 105 286 IPR001126 GO:0006281
Car08g00033 669 CDD PolY_Pol_IV_kappa 106 439 IPR022880 GO:0003887
Car08g00033 669 Gene3D - 23 109 - -
Car08g00033 669 MobiDBLite consensus disorder prediction 623 656 - -
Car08g00033 669 MobiDBLite consensus disorder prediction 624 638 - -
Car08g00033 669 PIRSF DNA_pol_eta 217 473 - -
Car08g00033 669 PIRSF DNA_pol_eta 452 669 - -
Car08g00033 669 PIRSF DNA_pol_eta 97 219 - -
Car08g00033 669 Hamap DNA polymerase IV [dinB]. 102 455 IPR022880 GO:0003887
Car08g00033 669 Pfam impB/mucB/samB family 108 253 IPR001126 GO:0006281
Car08g00033 669 PANTHER DNA POLYMERASE KAPPA 8 648 - -
Car08g00033 669 Pfam IMS family HHH motif 269 299 IPR024728 -
Car08g00033 669 PANTHER DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER 8 648 - -
Car08g00033 669 SUPERFAMILY DNA/RNA polymerases 80 334 IPR043502 -
Car08g00033 669 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 340 437 IPR036775 GO:0003684|GO:0006281
Car08g00033 669 Pfam Ubiquitin-Binding Zinc Finger 586 619 IPR041298 -
Car08g00033 669 Gene3D - 340 445 IPR036775 GO:0003684|GO:0006281
Car08g00033 669 ProSiteProfiles Zinc finger UBZ3-type profile. 582 619 IPR041298 -
Car08g00033 669 Gene3D - 110 261 IPR043128 -
Car08g00033 669 Pfam impB/mucB/samB family C-terminal domain 342 444 IPR017961 GO:0003684|GO:0006281
Car08g00033 669 Gene3D - 122 170 - -
Car08g00033 669 MobiDBLite consensus disorder prediction 639 653 - -
Car08g00033 669 Gene3D - 262 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00033 Car-Chr8 296619 301117 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00033 K03511 - gmx:100816973 1083.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00033 08 296619 301117 Car08g00033 08 296619 301117 ECH