Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00027 ATGGCTTCATCTTCTTCTTCTCAACCGGAATGTTTATTATCTGAAGAAGATTTCGACTTAATCCATGGCTCTGAATCTGGTTGGGTCCAAGCTCGAACTTCATGCCATCATCTCGCTTACTTATCCTCTGATCTTACCCACATTCCAATCCCTAATACTCCCTGCAACAGGTGCCAACACCCAACTGAAAACTGGCTTTGTTTGTCGTGTAAGGAAGTGCTATGTGGCCGTTTTGTGAACAGGCATATGCTCCAGCATTTTCAGGATACTAATCACAGTGTTGCCCTCAGTTTCAGTGATCTATCAGTATGCCTCCACCGCTTGGAGCAAATCAACCTCCTGCTTCTGGAGATGACCAGGCTGAAGCCTGAAGATATTTGGAAGTGCCAACATTATTCTCTTGATAAATTGAAAAGAAAACTAGATATAAGAAAACAGAAGAACCAGATCACAAGTGGTTGTCATGGCTTCTATGACCGAAGCTTTGAAAACTTCGAGGATGGACTGAAGATAAAACTAAAGATGATAGAGGAAAGAAGCAACACTAAAGATGGAAAATGA 561 0.4189 MASSSSSQPECLLSEEDFDLIHGSESGWVQARTSCHHLAYLSSDLTHIPIPNTPCNRCQHPTENWLCLSCKEVLCGRFVNRHMLQHFQDTNHSVALSFSDLSVCLHRLEQINLLLLEMTRLKPEDIWKCQHYSLDKLKRKLDIRKQKNQITSGCHGFYDRSFENFEDGLKIKLKMIEERSNTKDGK 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00027 186 SMART Zf_UBP_1 54 103 IPR001607 GO:0008270
Car08g00027 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 152 IPR013083 -
Car08g00027 186 PANTHER HISTONE DEACETYLASE-LIKE PROTEIN 2 103 - -
Car08g00027 186 Pfam Zn-finger in ubiquitin-hydrolases and other protein 55 103 IPR001607 GO:0008270
Car08g00027 186 SUPERFAMILY RING/U-box 33 102 - -
Car08g00027 186 ProSiteProfiles Zinc finger UBP-type profile. 33 136 IPR001607 GO:0008270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00027 - - tcc:18608067 160.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00027 08 262684 264115 Car08g00027 08 262684 264115 ECH