Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00022 ATGGCGGTTTCCATGGCTACTACTACTCTATTTTCTACATCCACTATAACTCTCAGGCCCCAACTTCAATCAAGGTTTGCATTTCCCGCAGTTCCTTCTACGTTACGGGTTGCTCCACTGCGAACGCTTACACTGGCCACCATCTCTCAGCCATCCACCGGCGGCAAAGTTCGCGGTATCATGAAGCCACGAAAAGTTTCTCCCGAGATGGCAGCCATCGTCGGCGTTCCAGAGATTTCCCGAACTCAAGCTCTCAAGTACATTTGGGCTTACATTAAGGAAAACAATCTTCAGGACCCTGAAAACAAGAAGCTTATACGCTGTGATGAGAAGCTGAAGAAGATATTTGCAGGGAAAGATGAAGTTGGTATGCTTGAGATTGCTGGGTTGATTAGCCCTCATTTCCTTAAGTGA 414 0.471 MAVSMATTTLFSTSTITLRPQLQSRFAFPAVPSTLRVAPLRTLTLATISQPSTGGKVRGIMKPRKVSPEMAAIVGVPEISRTQALKYIWAYIKENNLQDPENKKLIRCDEKLKKIFAGKDEVGMLEIAGLISPHFLK 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00022 137 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 1 136 - -
Car08g00022 137 Pfam SWIB/MDM2 domain 62 135 IPR003121 -
Car08g00022 137 ProSiteProfiles SWIB/MDM2 domain profile. 59 137 IPR003121 -
Car08g00022 137 SUPERFAMILY SWIB/MDM2 domain 54 137 IPR036885 -
Car08g00022 137 CDD SWIB-MDM2_like 64 135 - -
Car08g00022 137 Gene3D SWIB/MDM2 domain 54 137 IPR036885 -
Car08g00022 137 SMART swib_2 60 137 IPR019835 -
Car08g00022 137 PANTHER EXPRESSED PROTEIN-RELATED 1 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00022 Car-Chr8 243192 245077 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Car08g00022 SWIB 2.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00022 - - lja:Lj1g3v0050930.1 184.496
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00022 08 243192 245077 Car08g00022 08 243192 245077 ECH