Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00018 ATGGGCCATAAAGAATGGAAGCCCGAAATCAGTCCCAGCAAGCAACCTCTACTTGGCCTCGTTTCGCTCGGAAAGAAGACGGCGGCGGAAGTGAAAATGTTGGTCCGAGTCGGAGTGGTGAGGTCATGGAGTCGTCAGTGTCACATGTCCGCGGACGATGCCAAATGGCTTACACTTCCAGCTGTGAGTGCGACGGTGAAGAGTTCCTCGAACGAAGTATCTTCGTCCAGTTCGACGACTGCGTTGAAATGGGTTACTCAGTGCTGCCCCCAAATACCGAAAACTCTTGTGCACAAACTCTTTCGTCTAAGACAAGTTCGAATGCTTCCTAATTCTCCTCTTATTGCTGATAAATTGAAAAGGGTGGGAGCTAAGGATACCTTGAACTCTGGAGATCGTATATTTCTTCCCAATTCTGTTAaacaacaacatcaacatcaacaaACCCCCAAACAACCCCTCACTCTCACTCCCAAACAAATCAAATTTATGCGTTCTCTTGTTATCTATAAGGATCCTGCCACTGTTGTCCTCAATAAACCTCCTGGAATGCCAGTGCAGGGTGGCATCAATATCAAATGGAGTTTAGATGCGTTAGCTGCATCATCTTTAAATTATGATTACTCACAACCTCCTCGTCTGGTGCATAGACTAGACAGAGACTGTTCTGGAATTCTGGTCATGGGAAGAACACAAACAAGTACTGTAGTTCTGCATTCCATATTCCGCGACAAAACATCAAGGGCTTCTGATCATAATGACACGGAAAAGAGAATCCTTCAAAGAAGGTATTGGGCACTCGTCATCGGACGTCCTAGACGTTCAGGAGGCTTGATTACTTCTCCACTGGGTAAGGTGGTGGTTGACAACGGAAAATCTGATCGAATAACTATTGTTAACAATTCTACGTTAGTATCATCACAACATGCAGTTACAGAGTACCGAGTACTTGGATCATCATCCGATGGTTACACATGGTTAGAGCTTTCCCCCTTAACCGGTAGAAAACACCAGCTCCGGGTCCACTGTGCTGAGGTGTTAGGTACACCAATAGTTGGGGACTACAAGTATGGATGGCAAGCTCATAAAAAATGGGGACATTTTGATTTATGTAATCTGGAGGACTCAACTGAAGAACTTCTTAAGGAAGAGACACTCCCTTTTGGCCTTAATTTGAACAAGGGAAGCATCTCTGATAAGCATCCTCGTTTACATCTTCATTGCAAGCAAATAATCTTGCCCAATATATCTCAAGCACTGCAAGATGTTCAATCACTATCAGCTTCAAATTGTGACCTTTCAGTTGTTGAAGCACTTAAGTTGGAAGCGGAGTTGCCTCCATACATGCAAAGGAGTTGGGATGTGACGAATTCTTAA 1377 0.4372 MGHKEWKPEISPSKQPLLGLVSLGKKTAAEVKMLVRVGVVRSWSRQCHMSADDAKWLTLPAVSATVKSSSNEVSSSSSTTALKWVTQCCPQIPKTLVHKLFRLRQVRMLPNSPLIADKLKRVGAKDTLNSGDRIFLPNSVKQQHQHQQTPKQPLTLTPKQIKFMRSLVIYKDPATVVLNKPPGMPVQGGINIKWSLDALAASSLNYDYSQPPRLVHRLDRDCSGILVMGRTQTSTVVLHSIFRDKTSRASDHNDTEKRILQRRYWALVIGRPRRSGGLITSPLGKVVVDNGKSDRITIVNNSTLVSSQHAVTEYRVLGSSSDGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKKWGHFDLCNLEDSTEELLKEETLPFGLNLNKGSISDKHPRLHLHCKQIILPNISQALQDVQSLSASNCDLSVVEALKLEAELPPYMQRSWDVTNS 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00018 458 Pfam RNA pseudouridylate synthase 175 344 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Car08g00018 458 CDD PseudoU_synth_RluA_like 176 366 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Car08g00018 458 SUPERFAMILY Pseudouridine synthase 163 415 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Car08g00018 458 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 55 456 - -
Car08g00018 458 PANTHER RNA PSEUDOURIDINE SYNTHASE 3, MITOCHONDRIAL 55 456 - -
Car08g00018 458 Gene3D Pseudouridine synthase 159 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00018 Car-Chr8 207409 210679 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00018 - - gmx:100779473 604.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00018 08 207409 210679 Car08g00018 08 207409 210679 ECH