Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g03420 ATGTTCCTTTCTTTCACGTTTCTCTTGACATTAATATCATCATCTACGTTTCATGATAATCACACACCACCATCCACCAAAATATCCATCACAAACCACAACATTCAAAGCTTCACCAATGCTGGCATAGGCAACAATATCACTGGAATATCACAGTTCAAAAGATACCTATCTCGTTTTGGATATCTTAATCCACCACATGATCATAACAACAGAATCATCACTTTCAGCGACGAATTCGATGCTAGTTTTGAATCAGCGCTAATCAAATACCAACGGAATCTTGGAGTCCAAGTAACTGGAAAACTCGATACCAACACAGTTTCTGAAATGATGACACCAAGATGCGGTGTTCCAGACACAAAAACTCATCATCAACATAACAACATGACGAAGATGCATTCAACAAAGCACTTTGTATATTTTCCAGGAAAACCAAGATGGTCACGTGACAACGACATGCCAATCACACTAAACTACGCCTTCTCACGTGAATACATGATTCATAATATAAACATGCAAGACATAAAAAAAACATTCAAAAGAGCATTCTCTAGATGGAGTAGGGTTATTCCGGTGAGTTTTATTGAAACTGAAGATTATAGTTTTGCAGATATTAAAATAGGGTTTTATAGTGGTGATCATGGTGATGGTGAAGCATTTGATGGAGTTCTAGGAGTGTTAGCACATTCTTTCTCGCCGGAGATAGGAAGACTACATCTGGATGCAGCGGAGACGTGGGCGGTGGATATGGATGGTACTAAGTCGGAGGTGGCGATAGATTTGGAGTCAGTAGCAACACATGAGATTGGACATTTGTTAGGTTTGTCACATAGTTGTGTGAAAGAAGCTGTTATGTATCCAAGTTTAAGGCCAAGAGATAAAAGAGCAGATTTGAATATTGATGATATTAAAGGAGTTCAATCACTTTATGGATCTAATCCTAATTTTAGATCTCACTGGTCATTGGGATCTGATCTTTCCACTAATCATGCTGCAAACTTTGGACTTCATACTTTAATAATTGCTTTCATTTTTGCCCAATTCATTCACATTGTTTTATAA 1065 0.3765 MFLSFTFLLTLISSSTFHDNHTPPSTKISITNHNIQSFTNAGIGNNITGISQFKRYLSRFGYLNPPHDHNNRIITFSDEFDASFESALIKYQRNLGVQVTGKLDTNTVSEMMTPRCGVPDTKTHHQHNNMTKMHSTKHFVYFPGKPRWSRDNDMPITLNYAFSREYMIHNINMQDIKKTFKRAFSRWSRVIPVSFIETEDYSFADIKIGFYSGDHGDGEAFDGVLGVLAHSFSPEIGRLHLDAAETWAVDMDGTKSEVAIDLESVATHEIGHLLGLSHSCVKEAVMYPSLRPRDKRADLNIDDIKGVQSLYGSNPNFRSHWSLGSDLSTNHAANFGLHTLIIAFIFAQFIHIVL 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g03420 354 Gene3D Collagenase (Catalytic Domain) 42 317 IPR024079 GO:0008237
Car07g03420 354 PANTHER METALLOENDOPROTEINASE 4-MMP 23 348 - -
Car07g03420 354 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 140 315 - -
Car07g03420 354 SMART col_5 144 313 IPR006026 GO:0006508|GO:0008237|GO:0008270
Car07g03420 354 Pfam Putative peptidoglycan binding domain 50 110 IPR002477 -
Car07g03420 354 PANTHER MATRIX METALLOPROTEINASE 23 348 - -
Car07g03420 354 Pfam Matrixin 152 312 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Car07g03420 354 PRINTS Matrixin signature 111 124 IPR021190 GO:0004222|GO:0006508|GO:0008270
Car07g03420 354 PRINTS Matrixin signature 180 195 IPR021190 GO:0004222|GO:0006508|GO:0008270
Car07g03420 354 PRINTS Matrixin signature 204 232 IPR021190 GO:0004222|GO:0006508|GO:0008270
Car07g03420 354 PRINTS Matrixin signature 265 290 IPR021190 GO:0004222|GO:0006508|GO:0008270
Car07g03420 354 PRINTS Matrixin signature 299 312 IPR021190 GO:0004222|GO:0006508|GO:0008270
Car07g03420 354 CDD ZnMc_MMP 147 312 IPR033739 GO:0008237|GO:0008270
Car07g03420 354 SUPERFAMILY PGBD-like 42 121 IPR036365 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g03420 Car-Chr7 62299097 62300378 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g03420 - K07999 gmx:100781237 463.381