Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g03325 ATGTATCAATGGAGGAAGTTCGAGTTCTTCGAGGAGAAGTACGCTGCAAAATGCACAATTCCagatgaagaagaagacatcaatgagaaggagaaagagaaagagaaagagagaaaaaTCGAGTGCTGTTCGAGCGGAAGGGGTAAAGTGGTAACTGGTTTTGATGATGGCACCGTTTGCTTGTTCGATCGAGGACTTAAGTTCAATTATTCTTTTCAACCTCACTCCAATTCTGTTCTCTTTCTTCAGCAGCTCAAGCAACGCAACTTCCTGGTAACAATTGGGGAAGATGAACAACTCACTCCTCAGCAATCGGCTTTGTGCCTGAAGGTTTTTGACCTAGATAAGATGCAATCTGAAAGTTCAAGCAAGGCGAGTCCTGATTGTGTTGGGATATTGCGTATATTCACTAATCAGTTTCCTGAGGCAACGATTACATCTTTTATAGTCTTAGAGGAAGTGCCGCCTATACTACTCATAGCTATTGGCTTAGACAACGGTTCTATTTACTGCATCAAAGGAGACATTGCACGTGAGCGTATCACCCGTTTCAAGCTTCAAGTGGAAAACCATTCAGAGAAAACTCTTTCCTCAATCACTGGTCTTGGGTTTAGGGTGGACGGTCAATCACTTCAGTTGTTTGCAGTAACCCCAAGTTCTGTGAGCTTGTTTTCATTGCACGATCAACCACCAAGAAGGCAAACCCTTGATCAGATTGGATGTGGTATAAACAGTGTTGCGATGAGTGACCGTTCTGAGTTTATAATTGGTCGTCCAGAGGCAGTATATTTTTATGAAGTTGACGGGCGTGGTCCTTGTTGGGCGTTTGAGGGAGAAAAGAAATTGGTAGGATGGTTTCGTGGATACCTTTTGTGTGTTATTGCGGATCAAAGAACAGGAAAACAAACTTTCAACATCTATGACCTGAAGAATCGTTTAATAGCCCACAGTACGTTGGTTAAAGAAGTTTCTCATATGCTCTATGAATGGGGTAACATCATACTCATAACGACTGACAAATCAGCTTTATGTATTGGGGAAAAGGATATGGAAAGCAAGTTAGACATGTTATTCAAGAAAAACCTATATACTGTAGCAATCAATCTTGTTCAGACTCAACAAGCCGATGCCGCAGCTACTTCTGAAGTGCTGAGAAAATATGGAGATCATCTATACAGCAAGCAAGACTACGATGAAGCGATGGCCCAGTACATACATACTATTGGTCACCTTGAACCTTCTTATGTGATTCAGAAGTTTTTGGATGCTCAGAGAATCTACAACCTCACAAATTACTTGGAAAAGCTACACGAGAAGGGTCTTGCTTCTAAAGATCACACCACACTTCTATTAAACTGTTACACCAAATTGAAAGATGTTGAAAAATTGAATCTGTTCATCAAAAGTGAAGACAGCATTGGGGAACTTAAGTTTGACGTGGAAACAGCTATCAGGGTTTGCCGTGCTGCCAATTACCATGAGCATGCAATGTATGTTGCAAAGAAGGCAGGGAGGCACGAATGGTACTTGAAAATCTTGCTTGAAGATCTTGGTAGTTATGAAGAGGCCTTGGAATATATTTCTAGTCTTGAATCGAGTCAGGCAGGGATGACGATAAAGGAGTATGGTAAAATTCTAATAGAGCACAAGCCGTTGGAGACGATTCAGATTCTCATTAGGCTTTGCACAGATGATGGTGACAAAAAAGGACAATCAAATGGTGTGTACGTGTCTATGTTGCCATCTCCTGTTGATTTTCTCAGCATCTTTGTTCATCACCCTGAGTCCCTTATGGATTTTCTTGAAAAATATACCAATAAGGTCAAGGACTCACCTGCTCAGGTGGAGATTAACAATACCCTCTTAGAGTTGTATATATCCAATGAATTGAACTTTCCTTCAGTATCACAAGTTAATGAGGGTGCAGATTACCTTAATGTAGCATCACAAAAAACTTTGAGTTCAAGTGCCAAGTCCAATGGAACTATTGCCGATCACAAACGTTCAGAAAAGGAAAAGCACCGTCTTGAAAGGCGTGAAAAGGGACTACGCATGCTTAAGAGTGCATGGCCTCCAGAGGCAGAACATCCACTTTATGATGTTGATTTAGCTATTATACTATGTGAAATGAATGTTTTCAAAAACGGGCTTTTGTATTTGTATGAAAAGATGAAACTCTATAAGGAAGTAATCGCATGCTACATGCAGGCGCATGATCATGAGGGATTAATTGCATGCTGCAAAAGACTGGGCGATTCAGTTAAAGGAGGGGATCCATCTCTTTGGGCAGATGTACTCAAATATTTTGGTGAGCTTGGTGAAGATTGTTCCAAAGAAGTAAAAGAAGTTTTGAATTACATAGAGAGGGATAATATTTTGCCCCCCATAATTGTCCTTCAAACTCTTTCAAGAAATCCTTGCCTCACACTTTCTGTGATCAAGGATTACATTGCTCGGAAGCTTGAGCAGGAATCAAAGATGATTGAGGAGGACCGACAAGCTATTGAGAAATACCAGGATGACACACAAACAATGAGAAAAGAAATTCAGGATCTTAGGACAAACGCGAGGATTTTTCAGCTTAGCAAGTGCACGGCATGCACTTTCACCCTAGATCTGCCTGCTGTGCACTTCATGTGCATGCACTCATTCCATTTGCGGTGCCTTGGCGATAACGAAAAAGAATGCCCTGAGTGTGCCCCAGAATATAGGTCTGTCTTAGAAACGAAAAGAAATTTAGAGCAAAATTCTAAGGATCAGGACAGGTTTTTCCAGAAGGTTAAGAACTCCAAAGATGGGTTTTCGGTCATTGCTGAATATTTCGGGAAAGGGATCATCAGCAAAACAAGCAATGGATCGACTTCGGGTCTCAGATCTGGGAATGCATCATCCAGCAGTGGCTTCTGA 2907 0.4059 MYQWRKFEFFEEKYAAKCTIPDEEEDINEKEKEKEKERKIECCSSGRGKVVTGFDDGTVCLFDRGLKFNYSFQPHSNSVLFLQQLKQRNFLVTIGEDEQLTPQQSALCLKVFDLDKMQSESSSKASPDCVGILRIFTNQFPEATITSFIVLEEVPPILLIAIGLDNGSIYCIKGDIARERITRFKLQVENHSEKTLSSITGLGFRVDGQSLQLFAVTPSSVSLFSLHDQPPRRQTLDQIGCGINSVAMSDRSEFIIGRPEAVYFYEVDGRGPCWAFEGEKKLVGWFRGYLLCVIADQRTGKQTFNIYDLKNRLIAHSTLVKEVSHMLYEWGNIILITTDKSALCIGEKDMESKLDMLFKKNLYTVAINLVQTQQADAAATSEVLRKYGDHLYSKQDYDEAMAQYIHTIGHLEPSYVIQKFLDAQRIYNLTNYLEKLHEKGLASKDHTTLLLNCYTKLKDVEKLNLFIKSEDSIGELKFDVETAIRVCRAANYHEHAMYVAKKAGRHEWYLKILLEDLGSYEEALEYISSLESSQAGMTIKEYGKILIEHKPLETIQILIRLCTDDGDKKGQSNGVYVSMLPSPVDFLSIFVHHPESLMDFLEKYTNKVKDSPAQVEINNTLLELYISNELNFPSVSQVNEGADYLNVASQKTLSSSAKSNGTIADHKRSEKEKHRLERREKGLRMLKSAWPPEAEHPLYDVDLAIILCEMNVFKNGLLYLYEKMKLYKEVIACYMQAHDHEGLIACCKRLGDSVKGGDPSLWADVLKYFGELGEDCSKEVKEVLNYIERDNILPPIIVLQTLSRNPCLTLSVIKDYIARKLEQESKMIEEDRQAIEKYQDDTQTMRKEIQDLRTNARIFQLSKCTACTFTLDLPAVHFMCMHSFHLRCLGDNEKECPECAPEYRSVLETKRNLEQNSKDQDRFFQKVKNSKDGFSVIAEYFGKGIISKTSNGSTSGLRSGNASSSSGF 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g03325 968 Pfam Region in Clathrin and VPS 412 535 IPR000547 GO:0006886|GO:0016192
Car07g03325 968 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 404 555 IPR000547 GO:0006886|GO:0016192
Car07g03325 968 Gene3D - 34 318 IPR015943 GO:0005515
Car07g03325 968 Coils Coil 20 40 - -
Car07g03325 968 SUPERFAMILY WD40 repeat-like 38 319 IPR036322 GO:0005515
Car07g03325 968 Gene3D Tetratricopeptide repeat domain 351 655 IPR011990 GO:0005515
Car07g03325 968 SUPERFAMILY RING/U-box 863 904 - -
Car07g03325 968 PIRSF Vps11 576 954 IPR016528 -
Car07g03325 968 PIRSF Vps11 1 579 IPR016528 -
Car07g03325 968 ProSiteProfiles Zinc finger RING-type profile. 864 899 IPR001841 -
Car07g03325 968 Coils Coil 818 855 - -
Car07g03325 968 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 571 778 IPR000547 GO:0006886|GO:0016192
Car07g03325 968 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 11 HOMOLOG 3 947 IPR016528 -
Car07g03325 968 Pfam Vacuolar protein sorting protein 11 C terminal 904 946 IPR024763 -
Car07g03325 968 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 3 947 - -
Car07g03325 968 CDD RING-H2_Vps11 862 902 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g03325 K20179 - gmx:100793279 1740.7