Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g03299 ATGACAATGTTGAGTAACGGAAGTCCATGGACAAAGTTTGTTAATCCATCTTTTGCATTTCCCTCTCTTCATCAATCTTACACTTATACTTCACGAATTTTCTCCTTCCGACGTAAATTCTCTGTCAATGCTCTTTCACAACAATCTCTTCCTGTTCGTGTTCGTTTCGCTCCTTCTCCTACTGGTAACCTTCACGTTGGTGGTGCTAGAACTGCCCTATTCAACTACTTGTTTGCTAGGTCAAAAGGTGGGAAATTTTTGTTGAGAATTGAGGACACTGATTTGGAGAGGTCTACAAGGGAATCTGAGGAGGCAGTGCTTCGAGATCTTTCTTGGCTTGGTCTTGATTGGGATGAAGGGCCTGGTGTTGGTGGAGATTATGGTCCATATAGGCAATCTGAGAGGAATTCTATGTACAAAGAATATGCTGAGAAGCTCCTTCAGTCCGGTCAAGTTTATCGTTGCTTCTGTTCTAATGAGGAACTAGAGAAAATGAAGGAGGATGCTAAACTAAAGCAATTGCCTCCAGTATACACAGGTAAATGGGCCACTGCAACAGATGCAGAAGTAGAAGAAGAGCTGGCAAAAGGAACTCCTTATACATTTCGGTTTCGTGTCCCCAAAGGAAGTATAAAAATTACTGACTTAATACGAGGCGAGGTTAGTTGGAATTTGGATACACTTGGAGATTTTGTGATAATGAGGAGCAATGGGCAGCCAGTTTATAACTTTTGTGTGACGGTTGATGATGCTACCATGGCTATTTCCCATGTTATCAGAGCAGAGGAGCATTTACCAAACACTCTAAGGCAAGCATTAATATATAAGGCACTTGATTTTCCTATGCCTTATTTTGCACATCTTTCCTTGATTTTAGCTCCTGACCGGAGTAAATTATCAAAACGACATGGAGCAACATCAATAATTAGTTCTAAAACTTTGATATTTGCTGTCTCGCAGTTCAAGGAAATGGGATACTTACCTGAGGCAATGGTGAATTACCTAGCATTATTAGGTTGGGGCGATGGAACTGAAAATGAGTTTTACAGCCTTGAAAATCTTGTTGAAAAATTCACTATTGATCGTGTGAACAAAAGTGGTGCTGTTTTTGATTCCACAAAGTTAAGGTGGATGAATGGTCAACATTTAAGAGCACGTCCATCTGAGGAGTTGACCAAACTTATTGCCGAGCGCTGGAAGACATCCAACTTGCTCACAGTATCAGCAGGGCCCTTCGTTGAGGAATCGATTCAACTACTTAAGGATGGTATTGACTTGATAACTGATGCAGACAAGGCACTTTCTAACTTGCTTTCTTATCCTCTACATTCTACTTTACAAAGCCATGAAGCAGAACCTGTCATACGAGATAGTCTTGCCGAGTTTTGTGCCAGTTTCGTGGCTGCCTATGATAGTGGTGATCTGGTAGGTGCACTCGAAGAAGGCCAAGCTGGCTGGCAAAAGTGGGTGAAAGGCTTTGGAAAATCACTTAAGCGCAAGGGAAAATCACTCTTCATGCCCCTTCGGCTTCTGCTTACCGGAAAACTTCACGGACCCGATATAGGGACTAGTGTTGTATTGCTTTATAAAGCTGGAACTCCGGGTATCATAGCTCCTGAAGTTGATTTTGTGACAATTGATGAAAGATTTAAAATGATTAGGCAAATTAATTGGGAAACACTGTCCAAAGATCATGCTGTGAAGGAAACTGCTTCTACTGTCTAA 1725 0.4157 MTMLSNGSPWTKFVNPSFAFPSLHQSYTYTSRIFSFRRKFSVNALSQQSLPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFLLRIEDTDLERSTRESEEAVLRDLSWLGLDWDEGPGVGGDYGPYRQSERNSMYKEYAEKLLQSGQVYRCFCSNEELEKMKEDAKLKQLPPVYTGKWATATDAEVEEELAKGTPYTFRFRVPKGSIKITDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALDFPMPYFAHLSLILAPDRSKLSKRHGATSIISSKTLIFAVSQFKEMGYLPEAMVNYLALLGWGDGTENEFYSLENLVEKFTIDRVNKSGAVFDSTKLRWMNGQHLRARPSEELTKLIAERWKTSNLLTVSAGPFVEESIQLLKDGIDLITDADKALSNLLSYPLHSTLQSHEAEPVIRDSLAEFCASFVAAYDSGDLVGALEEGQAGWQKWVKGFGKSLKRKGKSLFMPLRLLLTGKLHGPDIGTSVVLLYKAGTPGIIAPEVDFVTIDERFKMIRQINWETLSKDHAVKETASTV 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g03299 574 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 58 69 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Car07g03299 574 Pfam tRNA synthetases class I (E and Q), catalytic domain 52 377 IPR020058 GO:0004812|GO:0005524|GO:0043039
Car07g03299 574 SUPERFAMILY An anticodon-binding domain of class I aminoacyl-tRNA synthetases 371 530 IPR008925 GO:0000049
Car07g03299 574 PANTHER GLUTAMATE--TRNA LIGASE 36 555 - -
Car07g03299 574 SUPERFAMILY Nucleotidylyl transferase 52 370 - -
Car07g03299 574 CDD GluRS_core 52 384 IPR033910 GO:0006424|GO:0008270
Car07g03299 574 PRINTS Glutamyl-tRNA synthetase signature 69 80 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Car07g03299 574 PRINTS Glutamyl-tRNA synthetase signature 84 97 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Car07g03299 574 PRINTS Glutamyl-tRNA synthetase signature 256 264 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Car07g03299 574 PRINTS Glutamyl-tRNA synthetase signature 55 67 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Car07g03299 574 PRINTS Glutamyl-tRNA synthetase signature 240 250 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Car07g03299 574 Gene3D HUPs 43 386 IPR014729 -
Car07g03299 574 PANTHER GLUTAMATE--TRNA LIGASE, MITOCHONDRIAL-RELATED 36 555 - -
Car07g03299 574 Gene3D - 445 534 IPR020751 -
Car07g03299 574 Pfam Anticodon binding domain 412 528 IPR045462 -
Car07g03299 574 TIGRFAM gltX_bact: glutamate--tRNA ligase 52 530 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Car07g03299 574 Hamap Glutamate--tRNA ligase [gltX]. 51 557 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g03299 Car-Chr7 60795143 60800215 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g03299 K01885 - gmx:100810730 941.028