Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g03290 ATGCAAGGCTTCTTCACTTATATTTTCATTCTTAGTTTTGTTTTACCTTGTTTTTGTACGAGGTTGAATGTAGGAATAGAAAATATTTTTATTAATGTAATGCAATTTGGTGCTCATGGAGATGGAAGATCAAATGATACACAAGCATTTGCTAGTGCATGGGATAGTGCATGTAAAGCAGGTGGGATGTCAACACTAGTTATACCAGCAGGACGATCATTTAACGTCACCAAAATTAATTTTAGTGGTCCTTGTAAAGGCAAAATTAATATTCAGCTTGAAGGGAAAATAGTGGCACCATCTAAAGGAGCATGGAAATTAGATGGAACATATTGGATTAGTATTCAACATTTAAATGGACTCACAATTGATGGCAATGGTAAAGGAGAAATCGATGGATATGGTTCTACTTGGTGGCAATGTGAAAGTTGCAAACGACCTAAGGTGTTATATTTCCATGCATGCAATGATCTTATTGTTCGTAATTTGGGGATTTCTAATAGCCCACAATCTCATGTATCCGTAAATATGTGCAATGGTGCAACATTCTCTCATATATCCATTAATGCTCCTGCTACTAGTCCCAACACCGATGGCTTTGATATTTCTGATTCTACTAATATCTTGATACAAGATTCCAATATAAAATCTGGTGATGATTGTATTGCTATTAATGGTGGCTGCTCTTTTATCAATGCTACGCGCATTACTTGTGGACCAGGTCATGGAATAAGTGTTGGTAGCCTTGGCAGAACTGAAGAACGTGATACCGTTTCAAATGTTCACGTACAAAATTGCACATTTATTGGGACTACAAATGGAGCAAGAATCAAGACATTTTCAGGTGGAATAGGCTATGCAAAACAAATTACTTTCGAGCAAATAATCCTCGAAAATGTTAAGAATCCAATAATTATAGATCAAGAGTACAATCTTTCTCTGGTTAAAAGTGTGCAAGTGAGTTTTGTGACATATAGAGGATTTAGAGGAACTTCTACTAGTGATGTTGCTATCAACTTAATTTGTGGCTCCTCTGGTTGTTTCAATCTTCAATTGGATCAAAATAATATTATTTCTGCTCAACCAGGAAGAAAAACTTCAGCTACTTGTAAAAATGCTCATGGAACAGCTACAAACACTATTCCAAATGTCCCTTGCCTAATAAAATAA 1170 0.3564 MQGFFTYIFILSFVLPCFCTRLNVGIENIFINVMQFGAHGDGRSNDTQAFASAWDSACKAGGMSTLVIPAGRSFNVTKINFSGPCKGKINIQLEGKIVAPSKGAWKLDGTYWISIQHLNGLTIDGNGKGEIDGYGSTWWQCESCKRPKVLYFHACNDLIVRNLGISNSPQSHVSVNMCNGATFSHISINAPATSPNTDGFDISDSTNILIQDSNIKSGDDCIAINGGCSFINATRITCGPGHGISVGSLGRTEERDTVSNVHVQNCTFIGTTNGARIKTFSGGIGYAKQITFEQIILENVKNPIIIDQEYNLSLVKSVQVSFVTYRGFRGTSTSDVAINLICGSSGCFNLQLDQNNIISAQPGRKTSATCKNAHGTATNTIPNVPCLIK 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g03290 389 ProSitePatterns Polygalacturonase active site. 235 248 IPR000743 GO:0004650|GO:0005975
Car07g03290 389 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 1 387 - -
Car07g03290 389 Gene3D - 21 385 IPR012334 -
Car07g03290 389 Pfam Glycosyl hydrolases family 28 58 376 IPR000743 GO:0004650|GO:0005975
Car07g03290 389 PANTHER - 1 387 - -
Car07g03290 389 SMART pbh1 205 226 IPR006626 -
Car07g03290 389 SMART pbh1 258 279 IPR006626 -
Car07g03290 389 SMART pbh1 178 204 IPR006626 -
Car07g03290 389 SUPERFAMILY Pectin lyase-like 25 387 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g03290 Car-Chr7 60644990 60649210 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g03290 4 376 Glycoside Hydrolase AT5G17200 41.667 9.29e-94 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g03290 K01184 - gmx:100820332 454.521