Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g03289 ATGCTAGGTTTCTTCACTTATATTTTGATTCTTAGTTTTATTTCACCTTGTTTTTGTACAAGGTTGGATGTAGGAACAAAAAATGCTTTTATTAATGTAATGCAATTTGGTGCTCGTGGAGATGGCATAGCTGATGATACACAAGCATTTGCTAGTGCATGGGATAGTGCATGTAAAGCAGCTGGGATGTCAACACTAGTTATACCAACAGGACGATCGTTTAGAGTCACCAAAATTAATTTTAGTGGTCCTTGCAAAGCTAAAATAAACATTCAGCTTGAAGGGAAAATAGTGGCACCATCTAAAGGAGCATGGAAATTAGATGGAACATATTGGATTAGTATTCAAAATGTAAATGGACTCACACTTGATGGAAATGGGAAAGGAGGAATCGATGGATATGGTTCTACTTGGTGGCAATGTCCAAGTTGCAAACGACCTAAGGTGTTATTTTTCCATGCATGCAATGATCTTATAGTTCGTAATTTGGGGATTTCTAATAGTCCACAATCTCATGTATCCGTAAACATGTGCAATCGTGCAACATTCTCTCATATATCCATTAATGCTCCTGCTACTAGTCCCAACACTGATGGCTTTGATATTTCTGATTCTACTAATATCTTGATACAAGATTCCAATATAAAATCTGGTGATGATTGTATTGCTGTCAATGGTGGTAGTTCCTTTATCAATGCTACTCGAGTTACGTGTGGACCAGGGCATGGAATAAGTGTTGGGAGCCTTGGTAGAAACGGACAGCTTGATACAGTTTCAGATGTTCACGTATTAAATTGCACATTTATTGGAACTTCAAATGGAGCTAGAATTAAGACCGTTCCCGGCGGATCTGGTTATGCAAAACGTATTACTTTTGACCAAATCATCCTTCAAAATGTTAAGAACCCAATAATTATAGATCAAAATTACAATGGTGTTGAAGACGAGGCTACAAATGTGCAAGTGAGCTTTGTGACATATAGAGGATTTAGAGGAACTTCTGCTGGTGATGTCGCTATCAACTTAGTTTGTGGACCCTTGCTAGGTTGTTTCAACATTGTATTTGATCAAAATAATATTGTATCTGCTAAACCAGGAGGGAAAACTTCATCTGCATGTAGGAATGCCCATGGAATAGCTAGAAATACTATTCCAAATGTCCCTTGCCTAATGAAATAA 1179 0.3749 MLGFFTYILILSFISPCFCTRLDVGTKNAFINVMQFGARGDGIADDTQAFASAWDSACKAAGMSTLVIPTGRSFRVTKINFSGPCKAKINIQLEGKIVAPSKGAWKLDGTYWISIQNVNGLTLDGNGKGGIDGYGSTWWQCPSCKRPKVLFFHACNDLIVRNLGISNSPQSHVSVNMCNRATFSHISINAPATSPNTDGFDISDSTNILIQDSNIKSGDDCIAVNGGSSFINATRVTCGPGHGISVGSLGRNGQLDTVSDVHVLNCTFIGTSNGARIKTVPGGSGYAKRITFDQIILQNVKNPIIIDQNYNGVEDEATNVQVSFVTYRGFRGTSAGDVAINLVCGPLLGCFNIVFDQNNIVSAKPGGKTSSACRNAHGIARNTIPNVPCLMK 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g03289 392 ProSitePatterns Polygalacturonase active site. 235 248 IPR000743 GO:0004650|GO:0005975
Car07g03289 392 PANTHER - 1 390 - -
Car07g03289 392 SMART pbh1 258 279 IPR006626 -
Car07g03289 392 SMART pbh1 178 204 IPR006626 -
Car07g03289 392 SMART pbh1 205 226 IPR006626 -
Car07g03289 392 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 1 390 - -
Car07g03289 392 Pfam Glycosyl hydrolases family 28 58 377 IPR000743 GO:0004650|GO:0005975
Car07g03289 392 Gene3D - 19 388 IPR012334 -
Car07g03289 392 SUPERFAMILY Pectin lyase-like 26 390 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g03289 Car-Chr7 60575768 60638757 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g03289 32 382 Glycoside Hydrolase AT5G44840 44.722 2.04e-100 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g03289 K01184 - gmx:100801217 437.187