Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g03129 ATGATTACAGTGAGTGTAAAGTGGCAAAAGGAACTTTTCAAAGATGTAGAAATTGATACCAGCCAGCCCCCTTATGTTTTTAAGTGCCAATTGTTTGATCTGACTGGAGTTCCTCCTGAAAGACAAAAAATTATGGTCAAGGGTGGTCTTTTAAAGGATGATGCTGATTGGGCAAGGTTAGGAGTGAAAGAGGGTCAAAAGCTAATGATGATGGGAACAGCTGATGAAATTGTGAAGTCTCCAGAGAAAGGAACTGTTTTTGTCGAAGATCTTCCCGAAGAAGAACAAGTAGCTGCTGTTGGACATACTGCTGGTCTTTTTAATTTGGGGAATACCTGTTACATGAACTCAACATTGCAATGCCTCCATTCTGTGCCAGAATTGAAGTCGGCTTTGATTGATTACTCACATTCCGGACGAAACAACGACGTTGATCAGTCTTCTCATATGTTGACCATTGCAACCCGTGACTTATTCAGTGAGCTTGATAAAAGTGTCAAGCCTGTGGCACCTATGCAGTTTTGGATGGTATTGAGGAAAAAGTACCCTCAGTTTGGCCAGCTGCATAATGGAGTGTTCATGCAACAGGATGCTGAAGAATGTTGGACACAACTTCTATACACACTTTCACAGTCTCTCAGATCCCCTGGATCTAGTGAAAATACTGATGCTGTAAAGGCTCTTTTTGGCACAGAACTTAATAGCAGGGTTTATTGCCAAGAGAGCAGTGAAGAAAGCTATGAAACAGAATCCGTTTATTCACTTAAATGCCACATATCACATGAAGTAAACCATTTGCATGAAGGACTAAAACATGGTTTAAAATCAGAGTTGGAAAAGGCTTCTGCTGCTTTGGGTCGTAGTGCTATCTACCTGAAGGAATCACGCATTAATGCCCTGCCAAGGTACTTGACTGTTCAGTTCGTCCGTTTCTTTTGGAAGAGGGAATCAAACCAAAAGGCTAAGATTTTGCGAAAAGTAGATTATCCTCTGGTCTTGGATGTTTATGATCTTTGTTCTGATGATCTCAAAAAGAAATTGGAAGCTCCTAGACAGGTCCTAAGAAATGATGAAGGAAAAAAGTTTGGTCTGAAAGTGAATGAGAAAAGCTCTGTTCGCAAGGAAAATGATGTAAAAATGTCCGATGCTGAGGGATCATCGAATGGAGGAGAGCCATCTGTTGCTCCAATGGAGGAAGGTGAAAAAGAAACACAAATGACTGGAATTTATGATTTGGTTGCTGTATTGACCCACAAGGGTAGGAGTGCTGATTCAGGACATTATGTTGGTTGGGTCAAGCAAGAAAATGGGAAATGGATAGAGTTTGATGATGACAATCCAAAACCACGAGTTGAAGACGACATCACTAGACTTTCTGGAGGAGGTGATTGGCATATGGCATATATAATCATGTACAAAGCTCGTGTTGTATCTCTGTAA 1440 0.409 MITVSVKWQKELFKDVEIDTSQPPYVFKCQLFDLTGVPPERQKIMVKGGLLKDDADWARLGVKEGQKLMMMGTADEIVKSPEKGTVFVEDLPEEEQVAAVGHTAGLFNLGNTCYMNSTLQCLHSVPELKSALIDYSHSGRNNDVDQSSHMLTIATRDLFSELDKSVKPVAPMQFWMVLRKKYPQFGQLHNGVFMQQDAEECWTQLLYTLSQSLRSPGSSENTDAVKALFGTELNSRVYCQESSEESYETESVYSLKCHISHEVNHLHEGLKHGLKSELEKASAALGRSAIYLKESRINALPRYLTVQFVRFFWKRESNQKAKILRKVDYPLVLDVYDLCSDDLKKKLEAPRQVLRNDEGKKFGLKVNEKSSVRKENDVKMSDAEGSSNGGEPSVAPMEEGEKETQMTGIYDLVAVLTHKGRSADSGHYVGWVKQENGKWIEFDDDNPKPRVEDDITRLSGGGDWHMAYIIMYKARVVSL 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g03129 479 Pfam Ubiquitin family 2 73 IPR000626 GO:0005515
Car07g03129 479 ProSiteProfiles Ubiquitin domain profile. 2 71 IPR000626 GO:0005515
Car07g03129 479 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 478 - -
Car07g03129 479 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 478 IPR044635 GO:0004843|GO:0016579|GO:0043161
Car07g03129 479 Gene3D - 1 73 - -
Car07g03129 479 Gene3D Cysteine proteinases 97 478 - -
Car07g03129 479 Pfam Ubiquitin carboxyl-terminal hydrolase 105 472 IPR001394 GO:0004843|GO:0016579
Car07g03129 479 SMART ubq_7 2 73 IPR000626 GO:0005515
Car07g03129 479 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 104 475 IPR028889 -
Car07g03129 479 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 410 428 IPR018200 GO:0004843|GO:0006511
Car07g03129 479 SUPERFAMILY Cysteine proteinases 102 473 IPR038765 -
Car07g03129 479 CDD Ubl_USP14_like 1 75 - -
Car07g03129 479 MobiDBLite consensus disorder prediction 372 401 - -
Car07g03129 479 SUPERFAMILY Ubiquitin-like 1 90 IPR029071 -
Car07g03129 479 CDD Peptidase_C19A 105 473 - -
Car07g03129 479 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 105 120 IPR018200 GO:0004843|GO:0006511
Car07g03129 479 ProSitePatterns Ubiquitin domain signature. 28 53 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g03129 Car-Chr7 58521523 58533314 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g03129 104 335 Miscellaneous Gene Families AT2G24640 23.790 3.73e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g03129 K11843 - gmx:100802120 889.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g03129 07 58521523 58533314 Car07g03129 07 58521523 58533314 ECH