LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car07g03115	atgagatATGGACCACACTGTATCTCTGTTTTCATTCCACTGATCGGAATAGCTGAAACCTTGTTTTATAGCTTAGCCGGTTGCTTCGATTTCCGTAGTTCAGAGCAGAAGCAGAAAGAGAAGTTCTCTTCTACATTCGACGATTTTCTTGCTCTCGCCAACGATTCTCCTTTTAGTGTGAATGAAATAGAGGCGTTGTTTGAATTGTACAAGAAGTTGAGTTGTTCAATCATTGACGATGGactaatccacaaaGAAGAGCTTACATTGGCACTATTGAAGACCACAGCTGGCAAGAATCTTTTCCTTGATAGGGTCTTTGATCTCTTTGATGAAAAAAAGAACGGCGTTATAGAATTTGAGGAGTTTGTGCATGCTCTCAGTGTCTTTCATCCTTATACTTCTTTGGAAAAGAAAATTGATTTTGCTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAACGAGAAGAAGTTCGACAAATGGTGGTTGCCATTTTGTCAGAATGTGGCATGGATGTGGAAAATGAAATCCTTGAAACCATTATTGATAAGACATTTCAAGATGCTGATGCTGACAAGGATGATAAGATCAGTAAAGAAGAGTGGAAAGAATTTGTCATTAAGAACCCATCACTCTTAAGGCACTTGACTCTTCCTAATCTGAAGGACATAACCACAGTATTTACCAGTTTCATTTTCAACACCGGAGTTGATGATTCCCACTGGCAAGTCAATGGCTAG	747	0.3788	MRYGPHCISVFIPLIGIAETLFYSLAGCFDFRSSEQKQKEKFSSTFDDFLALANDSPFSVNEIEALFELYKKLSCSIIDDGLIHKEELTLALLKTTAGKNLFLDRVFDLFDEKKNGVIEFEEFVHALSVFHPYTSLEKKIDFAFRLYDLRQTGYIEREEVRQMVVAILSECGMDVENEILETIIDKTFQDADADKDDKISKEEWKEFVIKNPSLLRHLTLPNLKDITTVFTSFIFNTGVDDSHWQVNG	248

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car07g03115	248	PRINTS	Recoverin family signature	106	127	-	-
	Car07g03115	248	PRINTS	Recoverin family signature	153	171	-	-
	Car07g03115	248	PRINTS	Recoverin family signature	199	219	-	-
	Car07g03115	248	SMART	efh_1	102	130	IPR002048	GO:0005509
	Car07g03115	248	SMART	efh_1	183	211	IPR002048	GO:0005509
	Car07g03115	248	SMART	efh_1	139	167	IPR002048	GO:0005509
	Car07g03115	248	ProSiteProfiles	EF-hand calcium-binding domain profile.	135	170	IPR002048	GO:0005509
	Car07g03115	248	SUPERFAMILY	EF-hand	53	232	IPR011992	-
	Car07g03115	248	ProSitePatterns	EF-hand calcium-binding domain.	192	204	IPR018247	-
	Car07g03115	248	ProSiteProfiles	EF-hand calcium-binding domain profile.	98	133	IPR002048	GO:0005509
	Car07g03115	248	PANTHER	EF HAND CALCIUM-BINDING FAMILY PROTEIN	4	241	-	-
	Car07g03115	248	Pfam	EF hand	103	128	IPR002048	GO:0005509
	Car07g03115	248	ProSiteProfiles	EF-hand calcium-binding domain profile.	179	214	IPR002048	GO:0005509
	Car07g03115	248	Gene3D	-	50	242	-	-
	Car07g03115	248	PANTHER	CALCINEURIN B	4	241	IPR045198	GO:0005509\|GO:0019722\|GO:0019900
	Car07g03115	248	CDD	EFh	103	164	IPR002048	GO:0005509
	Car07g03115	248	Pfam	EF-hand domain pair	138	207	IPR002048	GO:0005509

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car07g03115	Car-Chr7	58311357	58315762	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car07g03115	21	242	EF-hand Containing Proteins	AT5G55990	54.955	8.59e-82	243

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car07g03115	K06268		-	gmx:100306023	362.844