Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g03007 ATGTCTTGGGCAGGTCCTGAAGATATCTATCTTTCTACTTCACTTGCTAGTTATCTTGACAAGAAACTTCTTATATTGCTAAGAGATGGTAGAAAGCTCATGGGGACACTTCGCTCTTTTGATCAATTTGCTAATGCTGTTCTTGAGGGTGCCTGTGAGAGGGTTGTTGTTGGTGATCTGTATTGCGACATCCCTCTGGGTCTTTATGTAATCCGTGGGGAGAATGTTGTTCTAATTGGTGAGCTGGACATGGAGAGGGAGGAACTTCCCCCACATATGACTCGTGTTCCTACAGAAGAAATCTTGAGGGCACAGAAAGCAGAAAGGGATGCTTCAGATCTGAAAGGAACTATGAGAAAAAGAATGGAATTCCTTGACATGGACTGA 387 0.4341 MSWAGPEDIYLSTSLASYLDKKLLILLRDGRKLMGTLRSFDQFANAVLEGACERVVVGDLYCDIPLGLYVIRGENVVLIGELDMEREELPPHMTRVPTEEILRAQKAERDASDLKGTMRKRMEFLDMD 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g03007 128 CDD LSm1 12 82 IPR034104 GO:0000956
Car07g03007 128 SUPERFAMILY Sm-like ribonucleoproteins 13 87 IPR010920 -
Car07g03007 128 PANTHER U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM1 2 127 - -
Car07g03007 128 PANTHER LSM1 2 127 IPR044642 -
Car07g03007 128 Gene3D - 12 125 - -
Car07g03007 128 SMART Sm3 13 81 IPR001163 -
Car07g03007 128 Pfam LSM domain 14 80 IPR001163 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g03007 Car-Chr7 56783479 56787648 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g03007 K12620 - gmx:100306352 239.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g03007 07 56783479 56787648 Car07g03007 07 56783479 56787648 ECH