Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car07g02899 | ATGAACCAAGTGAAGCAAATTCAATGTTACACCCTAAGAAATGGCATAGACAACACCAAAATCCTCATTGAGAAACTACTTCAAATACCAAACCTACACTATGCCCAATTACTCTTGCACCATTCCCATAACCCAACTCTTTTCCTTTACAACAAACTCATTCAAGCCTATTCCTCCAAACACCAAAACCACCACCAATGTTTCTTCCTTTACTCCCAAATGCTCCTTCATGGCCACTCACCAAACCAACACACTTTTAATTTTCTCTTTAAAGCAGGTACCTCAGTTTCTTCAATTTCCCTTGGCCAAATGCTTCATACCCATTTCATCAAATCAGGTTTTAAACATGATGTCTTTGCTTCAACTGCTTTGCTTGATATGTATGCGAAATTGGGTTCTTTGAAACTTGCACGCCATGTGTTTGATGAAATGTCTGTGAGAGAGGTACCCACTTGGAATGCTATGATGGCAGGGTATACTAGGTTTGGTGATATGGAAAGAGCATTGGAGTTGTTTGGGTTGATGCCGGCGAGGAATGTGGTGTCGTGGACGACTGTTGTATCGGGTTACTCGCAGAACAAACAGTATGAGAAGGCTTTAGAGTTGTTTTTGAGGATGGAATGGGAGAAAGATGTGATTCCTAATGAAGTGACATTGGCTAGTGTTTTGCCAGCTTGTGCAAATCTTGGGGCACTTGAGATTGGTCAGAGGGTTGAAGCATATGCAAGGGAAAATGGGTTGTTTAAGAATTTGTTTGTAAGCAATGCTGTGTTGGAGATGTATGCAAAATGTGGTAAGATTGATGTTGCTTGGAAGGTGTTTGATGAGATGGGAAGATTCAGAAACTTGTGCTCTTTTAATTCAATGATAATGGGTTTGGCTGTTCATGGACAATGTGATAAGGCCATTGAACTTTATGATCAAATGTTGAGAGAAGGAACTTTGCCGGATGACGTGACATTTGTGGGGCTTCTCTTGGCATGCACTCATGGAGGCATGGTTGAAACAGGAAAGCATATCTTCAAGTCAATGACAAGAGACTTCAACATTATTCCCAAACTAGAACACTATGGCTGCATGGTTGATCTCCTAGGCCGTGCCGGAAAATTATCAGAGGCTTACGAGGTTATAAAAAGTATGCCAATGGTTCCAGACTCGGTAATATGGGGTGCTTTGTTGGGGGCTTGCAGTTTCCATGGTAATGTTGAGCTGGCTGAGATAGCGGCTGAGTCTTTATTTGTACTTGAGCCTTGGAATCCAGGAAATTATGTCATTCTTTCAAACATTTATGCATCAGCCGGCCAATGGAATGGAGTTGCAAAGCTCAGGAAGGTGATGAAAGGAGGAAAGATTACAAAGGCAGCCGGACATAGCTTCATTGAAGAGGGAGGTCGACTGCATAAGTTCATTGTGGAGGATAGATCACATTCAGAAAGTAACCAAATTTTTGCTTTGCTAGATGGAGTTTATGAAATGATAAAGTTTAATAAAAATGCATATGAATGCCATTTGGATTTTGATTTGATCAACCAATCATAG | 1539 | 0.41 | MNQVKQIQCYTLRNGIDNTKILIEKLLQIPNLHYAQLLLHHSHNPTLFLYNKLIQAYSSKHQNHHQCFFLYSQMLLHGHSPNQHTFNFLFKAGTSVSSISLGQMLHTHFIKSGFKHDVFASTALLDMYAKLGSLKLARHVFDEMSVREVPTWNAMMAGYTRFGDMERALELFGLMPARNVVSWTTVVSGYSQNKQYEKALELFLRMEWEKDVIPNEVTLASVLPACANLGALEIGQRVEAYARENGLFKNLFVSNAVLEMYAKCGKIDVAWKVFDEMGRFRNLCSFNSMIMGLAVHGQCDKAIELYDQMLREGTLPDDVTFVGLLLACTHGGMVETGKHIFKSMTRDFNIIPKLEHYGCMVDLLGRAGKLSEAYEVIKSMPMVPDSVIWGALLGACSFHGNVELAEIAAESLFVLEPWNPGNYVILSNIYASAGQWNGVAKLRKVMKGGKITKAAGHSFIEEGGRLHKFIVEDRSHSESNQIFALLDGVYEMIKFNKNAYECHLDFDLINQS | 512 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car07g02899 | 512 | Pfam | E motif | 399 | 461 | IPR046848 | - | |
| Car07g02899 | 512 | Pfam | PPR repeat family | 282 | 328 | IPR002885 | - | |
| Car07g02899 | 512 | Pfam | PPR repeat family | 178 | 227 | IPR002885 | - | |
| Car07g02899 | 512 | Pfam | PPR repeat family | 45 | 92 | IPR002885 | - | |
| Car07g02899 | 512 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 148 | 182 | IPR002885 | - | |
| Car07g02899 | 512 | PANTHER | OS06G0125600 PROTEIN | 2 | 460 | - | - | |
| Car07g02899 | 512 | Gene3D | Tetratricopeptide repeat domain | 332 | 413 | IPR011990 | GO:0005515 | |
| Car07g02899 | 512 | Gene3D | Tetratricopeptide repeat domain | 229 | 331 | IPR011990 | GO:0005515 | |
| Car07g02899 | 512 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 282 | 316 | IPR002885 | - | |
| Car07g02899 | 512 | TIGRFAM | PPR: pentatricopeptide repeat domain | 285 | 317 | IPR002885 | - | |
| Car07g02899 | 512 | TIGRFAM | PPR: pentatricopeptide repeat domain | 151 | 181 | IPR002885 | - | |
| Car07g02899 | 512 | TIGRFAM | PPR: pentatricopeptide repeat domain | 255 | 277 | IPR002885 | - | |
| Car07g02899 | 512 | TIGRFAM | PPR: pentatricopeptide repeat domain | 181 | 216 | IPR002885 | - | |
| Car07g02899 | 512 | Pfam | PPR repeat | 255 | 279 | IPR002885 | - | |
| Car07g02899 | 512 | Pfam | PPR repeat | 356 | 380 | IPR002885 | - | |
| Car07g02899 | 512 | Pfam | PPR repeat | 122 | 146 | IPR002885 | - | |
| Car07g02899 | 512 | Gene3D | Tetratricopeptide repeat domain | 31 | 209 | IPR011990 | GO:0005515 | |
| Car07g02899 | 512 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 46 | 81 | IPR002885 | - | |
| Car07g02899 | 512 | PANTHER | REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED | 2 | 460 | - | - | |
| Car07g02899 | 512 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 250 | 280 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Car07g02899 | Car-Chr7 | 54993964 | 54995863 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Car07g02899 | 5 | 494 | Glycoside Hydrolase | AT3G49170 | 32.661 | 2.39e-86 | 282 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car07g02899 | - | - | gmx:100790321 | 846.654 |