Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02871 ATGGCACCAAGAAACAGCCGCGGAAAGGCCAAGGGAGagaagaagaagaaggaagaaaagGTTCTTCCTGTTGTCATGGATATCACAGTGAACCTTCCTGATGAAACTAATGTTGTTCTCAAGGGGATATCGACGGATAGGATAATCGACGTTCGTCGGCTATTATCGGTGAATACAGAGACGTGTTATCTCACCAATTTTTCCTTATCACATGAGATAAGAGGGATACGTTTGAAGGATACGGTGGACGTGTCCGCACTCAAACCATGCCTCCTCACTTTAGTTGAAGAGGATTACGAAGAGGATGGAGCGGTGGATCACGTGCGAAGACTCCTGGACATCGTGGCCTGCACCACCAGCTTCGGTCCGTCGTCTCCTCCGAAGAACGCGGCGAAGTCGAGCAAATCTCAACCGCCTCCGGCGAAGCAATCACCGAAAGACGCTGCAGCGGCGGACGGAGACGGAGAGATAAGTCACTCGTGCCCTAAGCTGGAGAGCTTCTACGAGTTTTTCTCACTGTCACACCTCACTGCGCCTCTCCAATATGTGAAGAAAGCTTCGAAGCGAAATGTGGAGGAGATATCGGAGGCGGATCATCTCTTCTCGCTCGATGTGAAGGTGTGTAATGGGAAAGTGGTGCACGTTGAGGCTTGCAGAAAGGGGTTTTATAGCGTTGGGAAGCAGAGGATTCTGTGTCATAATCTCGTTGATTTGTTGAGACAGATTAGCAGAGCTTTTGACAATGCTTATGACGATCTCTTGAAGGCATTTTCAGAACGTAACAAGTTTGGAAATCTCCCTTATGGCTTCAGAGCCAACACATGGCTTGTTCCTCCTATTGCAGCACAATCACCATCATTTTTTCCTCCTCTTCCCGTGGAGGATGAAAATTGGGGAGGAAATGGTGGTGGTCTCGGAAGAAACGGAGAGTATGATTTGATTCCTTGGGCCAATAAGTTTTCTTTTATTGCATCTATGCCCTGCAAAACAGCAGAAGAAAGGCAAGTTCGTGATAGAAAAGCATTTCTTCTGCACAGCTTGTTTGTTGATGTTGCCATTTTCAGAGCAATTAGGGCTGTTAAACATGTTTTGGAAGAGCCCAATTTTAGCTGTTCAGTAGCAGAAAATGAAATTTACAGTGAGAGAGTAGGTGACTTGAGTGTTAGAGTCTTGAAAGATGGCTCTGTTGCAAACTTTAAGATTGATTCTAAAATTGATGGAGTTGAAGCTACAGGAGTAAATCAAAAGGATCTAGTCGAACGGAATTTATTGAAAGGGATCACTGCAGATGAAAATACTGCCGCCCATGATATTACCACTTTAGGTGTTGTTTACGTAAGATATTGTGGTTATGTGGTTGTTGTGAAAGTTGAAGGTGTAGGTGATGAAAAAGTCAATTCTTCATCTCATCAAAATAGTGAATTGTTTGATCAGCCAGAGGGTGGTGCCAATGCACTAAATATTAACAGTTTAAGATTTCTTCTTCACAGCACAGCCCTGCCGGAGAACAATAAACAGATGACTGAGATACAAATGTTTGAGGGTGAAGAGCTTGGTGGTACCGATACTTTTGTGGAAAAGCTGATTAAAAATAGTCTTGCTAATCTTGAGGAAGAGGAACTGAGTTCGGACTATTTTGTAAGATGGGAACTTGGTGCTTGCTGGGTACAACATTTGCAAGATCAAAACAGTACAGAAAAAGATAAGAAACCATCTTCGGAGAAGACTAGCAATGAAATGAAGGTCGAGGGTCTTGGGAAACCTCTCAAAGCCCTCAAGAATAATAATAAAAAGAAATCTGATTCAAGCAATCCTAATTTTGCATCTGAATCTTCAAAATCTAATCTCGAGGCTGAAAAGGCTGCATTGTCCTCAAGTGAAACCCAGCATGAAACTACAGCTGCTGAGAATGAGCTTGTGCTAAAAAGGATGTTATCTGAGGCAGCTTTTACCCGGTTGAAAGAATCAGGAACTGGACTTCACTGCAAGTCTATACAAGATTTGATTGACTTATCTCAGAAATATTACATGGATGTTGCTATCCCAAAACTGgtagcagattttggctcattggagctctctccagttgatggacgcacgctaactgattttatgcatacCAGGGGTTTACGCATGCGATCTCTTGGACATGTTGTCAAGCTTTCTGAAAAACTTTCACATGTGCAATCACTGTGCATTCATGAGATGATAGTTCGAGCTTTCAAGCACATCCTGAGGGCAGTGATTTCTGCTGTGGTTGACAAGGAGAAAATGGCTTTATCAATAGCTGGTGCATTGAATTTGCTGCTTGGTGTTCCTGAAAATAAAGAATCAGATAAATCATGCTATGTCCACCCTCTTGTATGGAAATGGTTAGAGTTGTTCTTGAAGAAACGGTTTGACTGGGATCTTAACAGGTTGAACTATAAAGATGTGAGGAAATTTGCAATTTTACGCGGCTTGTGTCACAAGgtgggaattgagctcgtaccaagggattttgacatggattctccatttcccttccaaaaatctgatattgtcagcttggttgcagttcacaagcaagcagcatgttcatctgcagatggaaggcagctcctggagtcatccaaaacagctttagacaagggaaagcttgaagatgctgttacctatgggacaaaggctcttgcgaagcttgtagcagtttgcggtccctaccatcggatgacagcaggagcatacagcctccttgctgtagttttatatcatactggagacttcaatcagGCTACAATTTATCAACAAAAAGCTTTGGATATCAACGAGAGAGAATTAGGTTTGGATCATCCTGATACCATGAAGAGCTATGGGGATCTTGCAGTTTTCTATTACAGACTTCAACACACAGAGCTGGCTCTTAAATATGTGAAGCGTGCTTTATATCTTTTGCATCTGACATGTGGGCCATCTCATCCAAATACTGCCGCAACTTACATTAATGTGGCTATGATGGAGGAAGGTCTGGGAAATGTACACATTGCTCTCAGATATCTTCACAAAGCATTAAAGTGCAACCAAAAACTACTTGGTGCAGATCATATTCAGACAGCTGCAAGTTACCACGCAATAGCAATAGCACTCTCGTTGATGGAAGCATATCCATTGAGTGTGCAGCATGAACAAACAACTTTGCAAATTCTGAGGGCAAAACTTGGCCCTGATGACTTGCGAACACAGGATGCTGCAGCTTGGCTTGAGTATTTTGAGTCCAAGGCTTTTGAACAGCAAGAAGCTGCTCGAAATGGTACAAGAAAACCTGATGCATCAATAGCTAGCAAAGGCCATCTAAGCGTGTCGGATCTTCTTGACTACATTAATCCTAATCATGATACCAAAGGAAGAGATGCAGCAGCAAAGAGAAGAAACCAGGTGAGAGCAATATCCTATCAGAACAATGTTTCAGCAAGTTCTGACGAGTCTTCAAAAGAAATTCAAAAAGAAGCTTCAGATGAAGAGTTACCTATACCTGAACCAGGAGGTGGTGCAGATTCTGAGAATGAGAGCAACTCGGCACCTGATTCAGAACAGCCAATTCTAGAAAAGATCTCGGATGAAAAGCCACAAACTTCTAATGACTTATTGTCCGAAGCACTTCCTGACGGAGAGGATGGATGGCAATCAGTTCAAAGACCAAGGTCGGCTGGCTCATATGGTCGAAGACTCAAACAAAGACGAGCAACACTTGGCAAAGTTTATAGTCACCAAAAGAATGTGGAAGTTGGGACTGAACATCCTTTGGTAAAGAGTGCTAATAAGGAAAATAGTAGGTATTATTTCTTGAAGAAGCGGACAATGTACCATGGGGGTTATGCAGATAATCGTGCTGTAAACATCAGCCAAGGCACTAAATTTGGAAGGAAAGCAGTCAAGGCTGTTGCATACAGGGTCAAGTCTACGCCCTCTGCTTCTAAAGCTATTGAAAATGAGACATTAGAAGTTGGTGACAAAGAACCTGATTCAATCGATGTTAATCCAGTTAAGACATCTATAGTTAGTCTTGGAAAAAGTCCTTCATACAAGGAAGTAGCCTTGGCTCCTCCCGGGACAATCTCTAAGTTGCAGGTCTATAATCCTCAAAGTGAGATTTCTGTTAGTCGTGAACATGATGAAAAACATGAAGAGGAAGATATTGAAGCTCACCGAAATATTAATCCAACCCCAAAAGAGGCGAATAATGCGGTTAAAGAGAAGTATGATGATTCTTTGTCAGATTCTATAGAAGATTCACAAGATGATACTTTAGTTGCTACTGAGAAGAAAGAAGAAACTCAGTTGAATAAAGTTGTGGAGGATAATTGTGTGGCTACTGAGGGGCTTGAATCTGGGGACATTGAAGCACAAGGAGCTGTTGTTAACAGCATAGTGATTAATGCCGTAGAGGATCCTGCAGACTCTTACAAACAAGAATTTGTTGCAAGTAATTCGCCTTGCAGTTTTGAACCTTGTAATAATACAAATTCTGGTTCAAATGGTGGTGAGGATTTAGGAGTCAATATATCATCATCTGGTCAGAGTCATGCTGGGGGCATCTCATATAAGAAATTGTCTGCGTCAGCAGCTCCATTCAACCCATCACCAGCTATTGCACGTCCAGCACCTATTGCCATGAACATGACTCATCCTTCTGGTCCCGGTACTGGTCCAGCTATTGGACACTGGCCAGTAAACATGAATGTTCACCCTGGACCCGTTGTTAACCCAATGTGTTCCTCTCCACACCATGCTTATCCATCACCTCCAACAACACCAAACATGATACAACCATTGCCATTCATGTATCCTCCTTATACCCAACCTCAATCAGTACAAACCAGCAACTTTCCGGTCACTAGCAATGCCTTCCATGCTAATCATTTTACATGGCAGTGTAATTTGAACCCTGTCATAGCTAAGTTTGGTCCTGGTGCTGTTTGGCCTGGTTGTCATCCTGTGGAATTTCCTCGTCCAGTACCTATTGTTGAATCAATCCCTGATATCATTTCAGAAGCACAAGTGCAGTGTTCTACAGTTGAGAGTCCAACTTCAGCTTCAGTTCTGCTTGAAGACATTAATAAGGTTGTGGATTCTAGTAAAGAGGTAAAAACTTCAGCATCAGAGATGAGTGATGATGATACAGTGAGAGTTGGTTCAGAAAGTATAAAAGATAACGGCAATCCAAATTTTCCCGGGACCGAAAATGCTGGGAATGAGCCAAATCAAAACACTGGCTTGAATGGCAGCACTAGCAATAGTGAAATGAACATGGATGGTGAGAAAACATTCAGCATTTTGATTCGGGGAAGAAGAAACCGAAAGCAGACTCTCAGAATGCCAATAAGTTTGCTTACCCGGCCCCATGGCTCTCAGTCATTTAAGGTTAACTATAACCGTGTAGTTAGAGGAAGTGATTCTCCCAGGTCTATCAATTTCTCTTCTAGTGAACATTGTACAGCTACTGCTTAA 5487 0.3937 MAPRNSRGKAKGEKKKKEEKVLPVVMDITVNLPDETNVVLKGISTDRIIDVRRLLSVNTETCYLTNFSLSHEIRGIRLKDTVDVSALKPCLLTLVEEDYEEDGAVDHVRRLLDIVACTTSFGPSSPPKNAAKSSKSQPPPAKQSPKDAAAADGDGEISHSCPKLESFYEFFSLSHLTAPLQYVKKASKRNVEEISEADHLFSLDVKVCNGKVVHVEACRKGFYSVGKQRILCHNLVDLLRQISRAFDNAYDDLLKAFSERNKFGNLPYGFRANTWLVPPIAAQSPSFFPPLPVEDENWGGNGGGLGRNGEYDLIPWANKFSFIASMPCKTAEERQVRDRKAFLLHSLFVDVAIFRAIRAVKHVLEEPNFSCSVAENEIYSERVGDLSVRVLKDGSVANFKIDSKIDGVEATGVNQKDLVERNLLKGITADENTAAHDITTLGVVYVRYCGYVVVVKVEGVGDEKVNSSSHQNSELFDQPEGGANALNINSLRFLLHSTALPENNKQMTEIQMFEGEELGGTDTFVEKLIKNSLANLEEEELSSDYFVRWELGACWVQHLQDQNSTEKDKKPSSEKTSNEMKVEGLGKPLKALKNNNKKKSDSSNPNFASESSKSNLEAEKAALSSSETQHETTAAENELVLKRMLSEAAFTRLKESGTGLHCKSIQDLIDLSQKYYMDVAIPKLVADFGSLELSPVDGRTLTDFMHTRGLRMRSLGHVVKLSEKLSHVQSLCIHEMIVRAFKHILRAVISAVVDKEKMALSIAGALNLLLGVPENKESDKSCYVHPLVWKWLELFLKKRFDWDLNRLNYKDVRKFAILRGLCHKVGIELVPRDFDMDSPFPFQKSDIVSLVAVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHIALRYLHKALKCNQKLLGADHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPNHDTKGRDAAAKRRNQVRAISYQNNVSASSDESSKEIQKEASDEELPIPEPGGGADSENESNSAPDSEQPILEKISDEKPQTSNDLLSEALPDGEDGWQSVQRPRSAGSYGRRLKQRRATLGKVYSHQKNVEVGTEHPLVKSANKENSRYYFLKKRTMYHGGYADNRAVNISQGTKFGRKAVKAVAYRVKSTPSASKAIENETLEVGDKEPDSIDVNPVKTSIVSLGKSPSYKEVALAPPGTISKLQVYNPQSEISVSREHDEKHEEEDIEAHRNINPTPKEANNAVKEKYDDSLSDSIEDSQDDTLVATEKKEETQLNKVVEDNCVATEGLESGDIEAQGAVVNSIVINAVEDPADSYKQEFVASNSPCSFEPCNNTNSGSNGGEDLGVNISSSGQSHAGGISYKKLSASAAPFNPSPAIARPAPIAMNMTHPSGPGTGPAIGHWPVNMNVHPGPVVNPMCSSPHHAYPSPPTTPNMIQPLPFMYPPYTQPQSVQTSNFPVTSNAFHANHFTWQCNLNPVIAKFGPGAVWPGCHPVEFPRPVPIVESIPDIISEAQVQCSTVESPTSASVLLEDINKVVDSSKEVKTSASEMSDDDTVRVGSESIKDNGNPNFPGTENAGNEPNQNTGLNGSTSNSEMNMDGEKTFSILIRGRRNRKQTLRMPISLLTRPHGSQSFKVNYNRVVRGSDSPRSINFSSSEHCTATA 1828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02871 1828 MobiDBLite consensus disorder prediction 561 635 - -
Car07g02871 1828 MobiDBLite consensus disorder prediction 1378 1398 - -
Car07g02871 1828 MobiDBLite consensus disorder prediction 122 157 - -
Car07g02871 1828 Pfam Tetratricopeptide repeat 905 975 - -
Car07g02871 1828 Pfam Tetratricopeptide repeat 989 1063 - -
Car07g02871 1828 Pfam Mitochondrial function, CLU-N-term 45 115 IPR028275 -
Car07g02871 1828 Gene3D Tetratricopeptide repeat domain 865 979 IPR011990 GO:0005515
Car07g02871 1828 SMART tpr_5 948 981 IPR019734 GO:0005515
Car07g02871 1828 SMART tpr_5 906 939 IPR019734 GO:0005515
Car07g02871 1828 SMART tpr_5 990 1023 IPR019734 GO:0005515
Car07g02871 1828 MobiDBLite consensus disorder prediction 1376 1429 - -
Car07g02871 1828 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 1 1810 IPR027523 GO:0006996
Car07g02871 1828 MobiDBLite consensus disorder prediction 122 141 - -
Car07g02871 1828 MobiDBLite consensus disorder prediction 1707 1764 - -
Car07g02871 1828 MobiDBLite consensus disorder prediction 1143 1235 - -
Car07g02871 1828 ProSiteProfiles Clueless (Clu) domain profile. 294 570 IPR025697 -
Car07g02871 1828 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 1810 - -
Car07g02871 1828 MobiDBLite consensus disorder prediction 598 635 - -
Car07g02871 1828 SUPERFAMILY TPR-like 872 977 IPR011990 GO:0005515
Car07g02871 1828 MobiDBLite consensus disorder prediction 1726 1764 - -
Car07g02871 1828 ProSiteProfiles TPR repeat profile. 906 939 IPR019734 GO:0005515
Car07g02871 1828 Pfam Translation initiation factor eIF3 subunit 135 693 835 IPR033646 -
Car07g02871 1828 MobiDBLite consensus disorder prediction 562 581 - -
Car07g02871 1828 Gene3D Tetratricopeptide repeat domain 980 1108 IPR011990 GO:0005515
Car07g02871 1828 CDD CLU-central 695 836 IPR033646 -
Car07g02871 1828 MobiDBLite consensus disorder prediction 1809 1828 - -
Car07g02871 1828 MobiDBLite consensus disorder prediction 1710 1725 - -
Car07g02871 1828 SUPERFAMILY Hypothetical protein c14orf129, hspc210 179 262 IPR023231 -
Car07g02871 1828 SUPERFAMILY TPR-like 943 1070 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02871 Car-Chr7 54564526 54582466 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02871 K03255 - gmx:100808136 2793.07