Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02860 ATGACATTTTGCATCATCTCTAACCACCAAATCTTTATGAATAACCTATCACCATTTCATCATCACAATCCCTTTTCTCTTCACAACCCAAAAACTCAAATGCTACCCAAAAGCCTTTCACCCATTTCAATTTCACTTCCAATACAAGACACTCATTTTTTCCCTCCTTCTTCTATTCAATTTTCATCCCCAAAATTTTCTCCATCTTTTCACCCTTTTGATGTGTTGAGTAAAGAAAGAACTTTGAATTCTGTTAAGGAATTACATACCCAGATGATAAAAATGCCTAAAAATGGAAACTTTACTACAATGGATGGAAGCATGGTGAGATACTATTTGGAATTTGGTGATTTTGTGTCAGCAATTAAGGTTTTCTTTGTGGGTTTTGCAAGAAATTATGTTCTATGGAACTCTTTTTTGGCGGAATTTGAAACTTTTGGAGGTGACCCGTTTGAGATTATAGTTGTGTTCAATGAATTGTGTAGTAAAGGAGTTGAATTTGATAGTAAAGCTCTCACTTTTGTTTTGAAAATTTGTTTATCTTTAAGGGATTTGTGGGTTGGTTTGGAAATTCATGCTTGTTTGATTAAAAAAGGTTTTCATTTTGATGTACATTTGAGTTGTGCTTTGATTAATTTCTATGAAAAGTGTTGGAGTATAGATAAGGCAAATCAAGTGTTTCATGAGACTTTATATCAAGAAGATTTCTTGTGGAATACGATAGTTATGGCAAATTTGAGGAGTGAGAGGTGGGAGAAGGCCTTAGAACTTTTCTGTAGAATGCAGAGAGCTTCTGCAAAAATTACTATTGGCACCATTGTGAAGATGTTGCAAGCATGTGGAAAATTAAGAGCTATCAATGAAGGGAAACAGATTCATGGGTATGCTTTAAGATTTGGACTACTTTCGAATACTTTAGTTTGCAATTCCATAATTAGTATGTACTCTAGAAATAGTAGACACAAACAAGCTAGATCGGTTTTTGATTCGATGGAGGACCGTAACTTATCGTCTTGGAATTCGATAATTTCGAGTTACGCGGTTGATGGTTGTTCGAACTATGCATTGGATAATATCGTTAAAGAAATGGAGAGTTCCAATATTAAACCAGACATTATAACATGGAATTCCGTTTTGTCGGGTTATCTTCTTCGAGGATCATTTGAAATGGTTCTAACTAGTTTCCGGAGTTTGCGTAGTGCAGGCTTCAAGCCAGATTCGTGCTCGGTAACTAGTGCTCTACAAGCAATTATTGAATTGGATAAGGCTAAGGCAGTGTTCAATCATGCAAAGAACAAAAACAATTACGCTTGGAATTCGTTGATATCGGGTTACTCCTTCAAGGGCATGTTTGGTGATGCTACAAAACTATTGAGCCAGATGGTGGAGGAAGGGACAACACCTGATTTGGTGACATGGAATGGTTTGGTTTCAGGTTATTCAATGCGTGGCCATATCGAGGAAGCTTCGGCCATTATTGCCCGTATCAAGAGTTCTGGAATTACTCCTAATGTGGTGTCTTGGACTGCTTTGATATCAGGTTGTTCTCAAAATGAGAAGTACATTGATGCCCTAAAGATTTTCAGCCAAATGCAAGAAGAAAATGTGAAACCTAACTCTACTACTGTTTGCAGCTTACTATGTGCATGTGCGGGCTCGTCGCTTTTGAAGAAAGGTGAAGAGATACATTGCTTTAGTATGAAACTAGGGTTTGTGGATGATATATACATTGCAACAGCACTCATTGACATGTATTGTAAAGCAGGAAAATTAAAAGTAGCTCATAACGTTTTCAACAAAATTCAACAGAAAACACTTCCATGTTGGAATTGCATGATGATGGGATATGCCATTCATGGCTATGGAGAAGAGGTAACGATTCTTTATGAGAAGATGTGTGAAAAGTGTATTAGACCTGATGCTATTACCTTCACAGCTCTTCtatccggctgcaagaattcgggtttagtcgaggaaggatggaagtactttgacagtatgcaggaagattacaatatcgttccaacaattgagcattactgttgcatggttgaccttcttgggaagtttggttttcttgatgaagcttgggatttcatcAAAACTATGCGGATTAAGCCGGATGCAAGTATTTGGGGTGCTCTTCTTGCATCCTGCAGAATTCACAAAAATATTCAGCTAGCTGAGATTGCGGCAAGGATGCTTTTCAAGATGGAACCATATAATTCTGCTAATTATGTGTTGATGATGAATTTGTATTCGAGTTTAAACCGATGGGATGATGTCGAGCGACTTCAGCGCTTGATGACTGGCTTGGAGATGAAAAGTCCACCTGTTTGGAGCTGGACACAAGTTAATCAGACTATTCATGTGTTTTCTACGGAAGGGAAGCCGCATACAGAAGAAGGGAGAATATATTTCGAGTTATATCAATTAATTTCCGAAATACGAAAGCTGGGATATGTACCTGATCTCAATTGTGTATGTCAGAACATTGATGACAATGAGAAAGAGAAGGTTCTTATGAGTCACACTGAGAAGTTGGCAATGGCATATGGAGTGATGAAAGTAAAAGGTGGATCACCAATTAGGATTGTTAAGAACACAAGAATTTGTCATGACTGTCATATGGTAGCAAAGTACATTTCTTTGGCTCGAAAACGCGAGATTTTCGTTAGAGATGGTGGCCGTTTTCACCATTTTAAAAATGGAACCTGTGCTTGTAATGATCGATGGTAA 2739 0.3534 MTFCIISNHQIFMNNLSPFHHHNPFSLHNPKTQMLPKSLSPISISLPIQDTHFFPPSSIQFSSPKFSPSFHPFDVLSKERTLNSVKELHTQMIKMPKNGNFTTMDGSMVRYYLEFGDFVSAIKVFFVGFARNYVLWNSFLAEFETFGGDPFEIIVVFNELCSKGVEFDSKALTFVLKICLSLRDLWVGLEIHACLIKKGFHFDVHLSCALINFYEKCWSIDKANQVFHETLYQEDFLWNTIVMANLRSERWEKALELFCRMQRASAKITIGTIVKMLQACGKLRAINEGKQIHGYALRFGLLSNTLVCNSIISMYSRNSRHKQARSVFDSMEDRNLSSWNSIISSYAVDGCSNYALDNIVKEMESSNIKPDIITWNSVLSGYLLRGSFEMVLTSFRSLRSAGFKPDSCSVTSALQAIIELDKAKAVFNHAKNKNNYAWNSLISGYSFKGMFGDATKLLSQMVEEGTTPDLVTWNGLVSGYSMRGHIEEASAIIARIKSSGITPNVVSWTALISGCSQNEKYIDALKIFSQMQEENVKPNSTTVCSLLCACAGSSLLKKGEEIHCFSMKLGFVDDIYIATALIDMYCKAGKLKVAHNVFNKIQQKTLPCWNCMMMGYAIHGYGEEVTILYEKMCEKCIRPDAITFTALLSGCKNSGLVEEGWKYFDSMQEDYNIVPTIEHYCCMVDLLGKFGFLDEAWDFIKTMRIKPDASIWGALLASCRIHKNIQLAEIAARMLFKMEPYNSANYVLMMNLYSSLNRWDDVERLQRLMTGLEMKSPPVWSWTQVNQTIHVFSTEGKPHTEEGRIYFELYQLISEIRKLGYVPDLNCVCQNIDDNEKEKVLMSHTEKLAMAYGVMKVKGGSPIRIVKNTRICHDCHMVAKYISLARKREIFVRDGGRFHHFKNGTCACNDRW 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02860 912 Gene3D Tetratricopeptide repeat domain 146 290 IPR011990 GO:0005515
Car07g02860 912 Gene3D Tetratricopeptide repeat domain 420 562 IPR011990 GO:0005515
Car07g02860 912 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 470 900 - -
Car07g02860 912 PANTHER OS05G0586900 PROTEIN 233 420 - -
Car07g02860 912 PANTHER OS05G0586900 PROTEIN 419 469 - -
Car07g02860 912 Pfam PPR repeat 679 704 IPR002885 -
Car07g02860 912 Pfam PPR repeat 338 357 IPR002885 -
Car07g02860 912 Pfam PPR repeat 308 335 IPR002885 -
Car07g02860 912 Pfam PPR repeat 237 263 IPR002885 -
Car07g02860 912 Pfam PPR repeat 579 604 IPR002885 -
Car07g02860 912 Gene3D Tetratricopeptide repeat domain 300 419 IPR011990 GO:0005515
Car07g02860 912 Gene3D Tetratricopeptide repeat domain 563 655 IPR011990 GO:0005515
Car07g02860 912 Gene3D Tetratricopeptide repeat domain 656 731 IPR011990 GO:0005515
Car07g02860 912 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 640 670 IPR002885 -
Car07g02860 912 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 434 468 IPR002885 -
Car07g02860 912 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Car07g02860 912 PANTHER OS05G0586900 PROTEIN 470 900 - -
Car07g02860 912 PANTHER OS05G0586900 PROTEIN 156 229 - -
Car07g02860 912 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Car07g02860 912 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 504 538 IPR002885 -
Car07g02860 912 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 233 420 - -
Car07g02860 912 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 419 469 - -
Car07g02860 912 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 156 229 - -
Car07g02860 912 Pfam E motif 722 784 IPR046848 -
Car07g02860 912 Pfam DYW family of nucleic acid deaminases 820 912 IPR032867 GO:0008270
Car07g02860 912 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 469 503 IPR002885 -
Car07g02860 912 Pfam PPR repeat family 608 651 IPR002885 -
Car07g02860 912 Pfam PPR repeat family 434 480 IPR002885 -
Car07g02860 912 Pfam PPR repeat family 503 551 IPR002885 -
Car07g02860 912 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 574 608 IPR002885 -
Car07g02860 912 TIGRFAM PPR: pentatricopeptide repeat domain 506 539 IPR002885 -
Car07g02860 912 TIGRFAM PPR: pentatricopeptide repeat domain 642 676 IPR002885 -
Car07g02860 912 TIGRFAM PPR: pentatricopeptide repeat domain 307 336 IPR002885 -
Car07g02860 912 TIGRFAM PPR: pentatricopeptide repeat domain 436 469 IPR002885 -
Car07g02860 912 TIGRFAM PPR: pentatricopeptide repeat domain 373 407 IPR002885 -
Car07g02860 912 TIGRFAM PPR: pentatricopeptide repeat domain 471 505 IPR002885 -
Car07g02860 912 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Car07g02860 912 Pfam Pentatricopeptide repeat domain 359 409 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02860 Car-Chr7 54368041 54371090 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02860 78 912 Glycoside Hydrolase AT3G49170 29.634 3.20e-123 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02860 - - mtr:MTR_8g027810 1415.21