Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02767 ATGTTCTGCAAGCTCCATTTCAAAAAACAGCTCTCTTTCCTTCCATCCCCTTTCTTATTTTTCACTCAATACTTGTCTATCTCTTCTCACCAATTCCATCCATGTAGCAGACTCAGAGCTTCTATTCCAATTCCTGACCAAACCCATTTCAATGATCCTAACACTATCCATTTATTTTGTGCTAATGCTCTTAAACTCTCTGCCAAAAAGTCCTATCTTCCTGAAGGAAAACAGCTACATGCCCATTTAATAAAGTTAGGATTTTGTCAGGTTCTTTCCTTACAAAATCAGATTTTGAGTGTTTATCTTAAATGTAAACAAACTAAAGATGCACAGAAACTGTTTGATGAATTGTCTGTTAGAAATGTTGTGTCGTGGAATATTATGATTCGTGGTATTGTTCGATGTGACAATGAAAATGAATTGGATTGTTTGCAATTGTGCTTTTCTTATTTTAGAAGAATGTTGATGGAAATGGTGGTTCCTGATTATATAACTTTTAATGGTTTGATTTGTTTATGTGCTCAGTTTCATGATATTGAAATGGGAGTTATGTTGCACTGTTTTACAGTGAAAGTTGGATTTGATTTGGATTGTTTTGTTGGTTGTGCTCTTGTTGATTTATATGCAAAATGTGGTTTTGTTGAGAATGCAAGGAGGGTGTTTTGTGTTGCTCCATGTAGAGATTTGGTTATGTGGAATGTGATGATTTCTTGCTATGCTTTCAATTGTTTACCACAAGAAGCTTTTAGGTTGTTCAATTCGATGCGGTTTGAGGTTGCGAATGGGGACGAGTTCACTTTTAGTAGCTTGCTTAGCCTAAGTGATGATTTGGAATATTACAATTTCGGAAAACAGGTTCACGGTCTTGTTCTGAGACAATCATTTGATTCAGATGTTTTAGTAGCTAGTGCATTGATCAACATGTATGCCAAAAACGACAATATAATTGATGCATGTAGAGTTTTCGATGAGATGTCGATTCGAAATGTTGTGGCATGGAATACCATGATTGTTGGATGTGGGAATCATGGCGACGGCAATGAGGTTATGAAGCTTCTTAAAGAGATGCTTCGCGAAGGGTTTCTTCCCGATGAACTGACTATTTCCAGCGTAATTAGTTCATGTGGCTATGCTTCGGCCATTACCGAAACACTGCAAGCACACGCCTTTGCGGTTAAATTATCATGTCAAGATTTTTTATCTGTCCCCAATTCTTTGATTAGTGCTTACTCAAAGTGCGGTAGCATTACTAGTGCATTAAAATGCTTTGAATTAACTTCAAAGCCTGATCTAGTTACATGGACTTCATTAATATATGCATATGCATTCCATGGTCTTGCTAAAGAAGCCATTGAGATATTTGAAAAGATGATATCTTGTGGCATAATACCAGATCGAATCGCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTCGGCTTGCGCTCATCATGGGCTTGTCATAA 1596 0.334 MFCKLHFKKQLSFLPSPFLFFTQYLSISSHQFHPCSRLRASIPIPDQTHFNDPNTIHLFCANALKLSAKKSYLPEGKQLHAHLIKLGFCQVLSLQNQILSVYLKCKQTKDAQKLFDELSVRNVVSWNIMIRGIVRCDNENELDCLQLCFSYFRRMLMEMVVPDYITFNGLICLCAQFHDIEMGVMLHCFTVKVGFDLDCFVGCALVDLYAKCGFVENARRVFCVAPCRDLVMWNVMISCYAFNCLPQEAFRLFNSMRFEVANGDEFTFSSLLSLSDDLEYYNFGKQVHGLVLRQSFDSDVLVASALINMYAKNDNIIDACRVFDEMSIRNVVAWNTMIVGCGNHGDGNEVMKLLKEMLREGFLPDELTISSVISSCGYASAITETLQAHAFAVKLSCQDFLSVPNSLISAYSKCGSITSALKCFELTSKPDLVTWTSLIYAYAFHGLAKEAIEIFEKMISCGIIPDRIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLALIMGLS 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02767 531 Pfam PPR repeat 433 463 IPR002885 -
Car07g02767 531 Pfam PPR repeat 405 425 IPR002885 -
Car07g02767 531 Pfam PPR repeat 96 122 IPR002885 -
Car07g02767 531 Gene3D Tetratricopeptide repeat domain 188 280 IPR011990 GO:0005515
Car07g02767 531 Gene3D Tetratricopeptide repeat domain 395 471 IPR011990 GO:0005515
Car07g02767 531 Gene3D Tetratricopeptide repeat domain 282 392 IPR011990 GO:0005515
Car07g02767 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
Car07g02767 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Car07g02767 531 TIGRFAM PPR: pentatricopeptide repeat domain 433 466 IPR002885 -
Car07g02767 531 TIGRFAM PPR: pentatricopeptide repeat domain 231 257 IPR002885 -
Car07g02767 531 TIGRFAM PPR: pentatricopeptide repeat domain 304 331 IPR002885 -
Car07g02767 531 TIGRFAM PPR: pentatricopeptide repeat domain 332 366 IPR002885 -
Car07g02767 531 Gene3D Tetratricopeptide repeat domain 36 187 IPR011990 GO:0005515
Car07g02767 531 PANTHER OS07G0578800 PROTEIN-RELATED 40 469 IPR045215 GO:0003723|GO:0009451
Car07g02767 531 PANTHER OS07G0259400 PROTEIN 40 469 - -
Car07g02767 531 Pfam PPR repeat family 229 272 IPR002885 -
Car07g02767 531 Pfam PPR repeat family 329 376 IPR002885 -
Car07g02767 531 Coils Coil 468 469 - -
Car07g02767 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 259 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02767 Car-Chr7 53134860 53136476 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02767 59 469 Glycoside Hydrolase AT3G49170 29.977 1.40e-53 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02767 - - gmx:100778378 687.567