LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car07g02697	ATGGCTACTACTGCCTCTGCTTCATTCACTCGCTTCTCTATTATCCCAAAACCACCTTCCCAACCGCATTTCATCCTATACAACTTCCCTAATCGAACCGGCACATCCCGGTTCACCTGTTCAGCCGGTCAGGCCGGGTTATTCTCTAAACTAGGCCGGTTACTAAAGGAGAAAGCGAAGAGCGATGTAGAGAAGTTATTCTCGGGTTTCTCAAAGACTCGTAACAACCTCTCCGTCATCGATGAGCTTCTCCTCTATTGGAACCTCTCTGACACTGATAGAGTCCTCGATGAACTCGAAGAGGCTCTTTTAGTGTCTGATTTTGGACCGAAAATCACTATGAAGATAGTGGAGAATTTGCGCGAGGATATACTTTCAGGGAAGCTTAAATCAGGGAATGAGATAAAGGAAGCACTGAAGAAGAATGTTTTGGATCTGTTAACCAAAAAGGGGAGTAAAACTGAACTTCAACTTGGATTCAGGAAACCAGCTGTAATAATGATAGTTGGTGTTAATGGTGGTGGGAAGACAACATCTTTGGGAAAGCTGGCTTATAGATTGAAGAATGGAGGTGCTAAGATATTGTTTGCAGCTGGTGATACATTCAGAGCAGCTGCTAGTGATCAGCTGGAAATATGGGCTGAAAGGACTGGGTGTGAGATTGTTGTGGCTGAGTCCCAGAAAGCCAAAGCATCATCAGTGCTTTCACAAGCTGTAAAAAGAGGAAAGGAGCTAGGTTTTGATGTTGTGTTATGTGATACATCTGGGCGTTTGCATACTAATTACAGCCTAATGGAAGAGTTGATTTCATGTAAAAAGGCTGTTGCTAAAGTAGTTGCCGGTGCACCCAATGAGATCCTACTCGTTCTGGATGGGACTACTGGTTTGAACATGTTGCCACAAGCAAGAGAATTCAATGAAGTTGTGGGTGTTACTGGTTTAATTTTGACCAAACTGGATGGTTCTGCAAGAGGTGGCTGTGTGGTCAGTGTGGTTGATGAGCTTGGAATCCCTGTAAAATTTGTGGGTGTTGGTGAAGGGGTTGAAGATCTTCAACCCTTTGACGCGGAGGCCTTTGTCAATGCCATTTTCATGTAA	1098	0.4408	MATTASASFTRFSIIPKPPSQPHFILYNFPNRTGTSRFTCSAGQAGLFSKLGRLLKEKAKSDVEKLFSGFSKTRNNLSVIDELLLYWNLSDTDRVLDELEEALLVSDFGPKITMKIVENLREDILSGKLKSGNEIKEALKKNVLDLLTKKGSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAYRLKNGGAKILFAAGDTFRAAASDQLEIWAERTGCEIVVAESQKAKASSVLSQAVKRGKELGFDVVLCDTSGRLHTNYSLMEELISCKKAVAKVVAGAPNEILLVLDGTTGLNMLPQAREFNEVVGVTGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFM	365

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car07g02697	365	PANTHER	SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA	32	364	-	-
	Car07g02697	365	CDD	FtsY	164	363	-	-
	Car07g02697	365	Gene3D	-	155	365	IPR027417	-
	Car07g02697	365	Pfam	SRP54-type protein, helical bundle domain	92	141	IPR013822	GO:0005525\|GO:0006614
	Car07g02697	365	SMART	AAA_5	162	335	IPR003593	-
	Car07g02697	365	Gene3D	-	53	154	IPR042101	-
	Car07g02697	365	Pfam	SRP54-type protein, GTPase domain	163	364	IPR000897	GO:0005525\|GO:0006614
	Car07g02697	365	SUPERFAMILY	Domain of the SRP/SRP receptor G-proteins	63	140	IPR036225	-
	Car07g02697	365	SMART	SRP54_3	163	365	IPR000897	GO:0005525\|GO:0006614
	Car07g02697	365	PANTHER	BNAA04G26420D PROTEIN	32	364	-	-
	Car07g02697	365	TIGRFAM	ftsY: signal recognition particle-docking protein FtsY	92	364	IPR004390	GO:0006614
	Car07g02697	365	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	160	363	IPR027417	-
	Car07g02697	365	SMART	SRP54_N_2	66	147	IPR013822	GO:0005525\|GO:0006614
	Car07g02697	365	ProSitePatterns	SRP54-type proteins GTP-binding domain signature.	338	351	IPR000897	GO:0005525\|GO:0006614

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car07g02697	Car-Chr7	51921245	51929743	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car07g02697	K03110		-	gmx:100791073	622.468

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car07g02697	07	51921245	51929743	Car07g02697	07	51921245	51929743	ECH