Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02622 ATGTTCCAATCTTTCACTTCTTGCTTTACCTTTCTTCATCATAAAACCAAATCTCTCCACAACCAACCAAAAAGACAACCCAACAAATTTTGTTCCAATTCCGACTTCTCAATCTCTTCTTTCATCCACATGGAAGTATCTAGCCAATTTCGACAAGTTTTCAAGCTCATCGACACGAATGGAGATGGAAATATTTCAACGAATGAACTCGCCGAAGTTCTTTCATGTCTTGGATATGATAAGTACACGGCTACTAAAGAAGCTGAGAATATGATAAAAGTTTTGGACTTCAATGGAGATGGGTTTGTAAATATGGATGAATTCATGTTTGTCATGAAAGAAGATCACTATGGAAAAGGAAAAGAGCTTGATCATGATGAGTATTTAATGGATGCTTTTCATGTATTTGATATTGACAAGAATGGATTAATCTCACCTAAGGAATTGAGAAGTGTTTTGCTTAATCTTGGTTGTGAGAATTGTAGTTTGAAGGATTGTAAGCTTATGATTAAAGGGGTTGATAAGAATGGAGATGGGTTTGTTGATTTTGAAGAATTTAGAACCATGATGAAAACAGGACCCAAATAG 588 0.3503 MFQSFTSCFTFLHHKTKSLHNQPKRQPNKFCSNSDFSISSFIHMEVSSQFRQVFKLIDTNGDGNISTNELAEVLSCLGYDKYTATKEAENMIKVLDFNGDGFVNMDEFMFVMKEDHYGKGKELDHDEYLMDAFHVFDIDKNGLISPKELRSVLLNLGCENCSLKDCKLMIKGVDKNGDGFVDFEEFRTMMKTGPK 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02622 195 ProSiteProfiles EF-hand calcium-binding domain profile. 45 80 IPR002048 GO:0005509
Car07g02622 195 ProSitePatterns EF-hand calcium-binding domain. 174 186 IPR018247 -
Car07g02622 195 PANTHER CALCIUM-BINDING PROTEIN CML25-RELATED 28 193 - -
Car07g02622 195 Pfam EF-hand domain pair 127 191 IPR002048 GO:0005509
Car07g02622 195 Pfam EF-hand domain pair 49 113 IPR002048 GO:0005509
Car07g02622 195 Gene3D - 10 119 - -
Car07g02622 195 Gene3D - 120 195 - -
Car07g02622 195 ProSitePatterns EF-hand calcium-binding domain. 137 149 IPR018247 -
Car07g02622 195 ProSiteProfiles EF-hand calcium-binding domain profile. 83 118 IPR002048 GO:0005509
Car07g02622 195 SUPERFAMILY EF-hand 42 192 IPR011992 -
Car07g02622 195 CDD EFh 128 191 IPR002048 GO:0005509
Car07g02622 195 ProSitePatterns EF-hand calcium-binding domain. 58 70 IPR018247 -
Car07g02622 195 ProSiteProfiles EF-hand calcium-binding domain profile. 124 159 IPR002048 GO:0005509
Car07g02622 195 CDD EFh 49 113 IPR002048 GO:0005509
Car07g02622 195 SMART efh_1 165 193 IPR002048 GO:0005509
Car07g02622 195 SMART efh_1 87 115 IPR002048 GO:0005509
Car07g02622 195 SMART efh_1 128 156 IPR002048 GO:0005509
Car07g02622 195 SMART efh_1 49 77 IPR002048 GO:0005509
Car07g02622 195 ProSiteProfiles EF-hand calcium-binding domain profile. 161 195 IPR002048 GO:0005509
Car07g02622 195 PANTHER CALCIUM BINDING PROTEIN 28 193 - -
Car07g02622 195 ProSitePatterns EF-hand calcium-binding domain. 96 108 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02622 Car-Chr7 50317458 50318555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02622 49 195 EF-hand Containing Proteins AT1G24620 44.000 2.05e-33 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02622 - - gmx:100799475 262.692