Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02265 ATGGCCACTTCAAAACCCATATCTCCATTCAGACTCTCCTCCCTCCTCCGATCTCAAAAAGACCCATCCCTTGCATTCCAACTCTTTCTCAACCCCAACCCCACCCTTCAAAATCGCCCATTCCGTTATTCCCTCCTTTCCTATGACCTCATTATCACCAAACTCGGTCGTGCCAAAATGCTCCCACAAATGGAACAAATTCTCCAACACCTCCACAATGATACTCGCCACCGCGTCCCCGAACCACTCCTCTGCCACGTCATCGACTTCTACGCACGTGCCCGCCTCCCATCACGTGCCATCCAAACCTTCCTCTCCATCCCTTCCTTCCGCTGCACGCCAACTCTTAAATCATTCAATTCCCTACTCAACGCCCTCCTAACCTGCCGCCAATTCCAAACAATCACCCGAGTGGCTTCCCTTTTAAATGAATTCGGTCCGCCAAACCCCTGCACCTACAACATCCTCATCCGATCCTGTTTCCTCCAAGGCCATGCCGATCGCGCCTTGAAACTGTTCGATGAAATGTGTAGCTGTGGCGTCCTCCCTGATGCGGTCACATTCGGGACCTTAATCCATGGGCTGTGTAAGAATTCAATGATGCATAAGGCTTTTGAAATGAAAAAATTGATGATTGAGGATTTTAAGTTGAAGCCATGTGTTTCTGTTTACACTAACTTGATTAAAGGTGTTTGCGAGATTGGGGAACTTGATTGGGCATTTACGATCAAGGATGAGATGGATAGGAACAAATTGAGATCAGATGCTGTTGTTTATAACACTCTGATTAACGCGCTTTTTAAGGCAGGGAGAAAGGAAGAGTCTTTAAGGGTTTTGGAGGAAATGAAGGAGAGTGGCTGCAATTGGAATTCGGTTACTTGTAATGTAATGATTGGGGAGTTTTGTAGAGAAAAGAATTTCAAAGAAGCTTATAGGATTTTGGATGGTGTGGAAGGTGTGAAGCCTGATGTTTTTGGTTACAATGTGGTGATTGGTTGTCTGTGTAGAGAAGGGAAATGGAATGAAGCAAATGATCTGTTTCAGGATATGTTGCGGCGAAAGTGTGTTCCCGATGTTGTCACGTATCGCACACTGTTTGATGGGATTTGTCGGTGGATGCAGTTCCAGGAAGCTGCATTTGTTTTAGATGAGATGTTGTTTAAAGGATATGTTCCCCATTCTAGGAGTTTGAATGAATTTGTCGGTGGTTTGTGCAGGGAAGGGAACTTTGAGCTGTTGTCAACAGTTTTGAGTGGTTTGGTTAGTAGAGGAGATTTTTGCAATGGCAGTTTATGGAATGTTTTGGTTCCCATGGTTTGCGAGCCGGAGAAGTTGGCAGCAAAACCTTTTGAAATTTTTGATGATTTGGTGGCATGA 1377 0.451 MATSKPISPFRLSSLLRSQKDPSLAFQLFLNPNPTLQNRPFRYSLLSYDLIITKLGRAKMLPQMEQILQHLHNDTRHRVPEPLLCHVIDFYARARLPSRAIQTFLSIPSFRCTPTLKSFNSLLNALLTCRQFQTITRVASLLNEFGPPNPCTYNILIRSCFLQGHADRALKLFDEMCSCGVLPDAVTFGTLIHGLCKNSMMHKAFEMKKLMIEDFKLKPCVSVYTNLIKGVCEIGELDWAFTIKDEMDRNKLRSDAVVYNTLINALFKAGRKEESLRVLEEMKESGCNWNSVTCNVMIGEFCREKNFKEAYRILDGVEGVKPDVFGYNVVIGCLCREGKWNEANDLFQDMLRRKCVPDVVTYRTLFDGICRWMQFQEAAFVLDEMLFKGYVPHSRSLNEFVGGLCREGNFELLSTVLSGLVSRGDFCNGSLWNVLVPMVCEPEKLAAKPFEIFDDLVA 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02265 458 TIGRFAM PPR: pentatricopeptide repeat domain 360 392 IPR002885 -
Car07g02265 458 TIGRFAM PPR: pentatricopeptide repeat domain 186 217 IPR002885 -
Car07g02265 458 TIGRFAM PPR: pentatricopeptide repeat domain 257 290 IPR002885 -
Car07g02265 458 TIGRFAM PPR: pentatricopeptide repeat domain 327 359 IPR002885 -
Car07g02265 458 TIGRFAM PPR: pentatricopeptide repeat domain 292 315 IPR002885 -
Car07g02265 458 TIGRFAM PPR: pentatricopeptide repeat domain 151 185 IPR002885 -
Car07g02265 458 Pfam PPR repeat family 322 371 IPR002885 -
Car07g02265 458 Pfam PPR repeat family 148 197 IPR002885 -
Car07g02265 458 Pfam PPR repeat family 255 303 IPR002885 -
Car07g02265 458 Gene3D Tetratricopeptide repeat domain 318 451 IPR011990 GO:0005515
Car07g02265 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 214 IPR002885 -
Car07g02265 458 PANTHER OS05G0207200 PROTEIN 1 446 - -
Car07g02265 458 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 1 446 - -
Car07g02265 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Car07g02265 458 Gene3D Tetratricopeptide repeat domain 10 142 IPR011990 GO:0005515
Car07g02265 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Car07g02265 458 Pfam PPR repeat 223 250 IPR002885 -
Car07g02265 458 Gene3D Tetratricopeptide repeat domain 214 317 IPR011990 GO:0005515
Car07g02265 458 Gene3D Tetratricopeptide repeat domain 143 213 IPR011990 GO:0005515
Car07g02265 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 255 289 IPR002885 -
Car07g02265 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 392 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02265 Car-Chr7 34709215 34711520 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02265 149 458 Glycosyltransferase AT1G05670 27.244 9.54e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02265 - - gmx:100781017 579.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g02265 07 34709215 34711520 Car07g02265 07 34709215 34711520 ECH