Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02173 ATGGCATCGACAATATTTCTCAAGTCTCGTAACTTCACAGCAACATTTCTACTGTGTAGACCGTACTGTTCAACAGTCACGAACAGTAGAAACCTCTTCTCCAGAATCAGCCCTCTCGGAGACCCCTCTATCAGCGTTTCTCCCATTCTCGAAAACTGGCTTCAAGAAGGTAACACTCTCAGTGCCCAACACCTTCAGTGTATCATCAAAACGCTACGCAACCGCAGACGATTCCATCAAGCACTTGAGGCTTCTGAATGGATGAGTAGCAAAGGGCTATGCACAATTTCACCAACTGACCATGCCGTGCAACTAAATCTTATTGGTAAAGTTTGTGGACTAGATAGTGTGGAAAGCTATTTCCAGAATTTAAGTGATAGAGATAAAACTAAAAAGGCTTATGGTGCTCTTTTGAATTGTTATGTGAGAGAAGGATTAGTTGATAAGTCACTCTCCCTGATGCAGAAGATGAAGGATATGGGTTTTGTTTCTGCTCTCGAATACAATAATATTATGTGTCTTTACTTGCAATCCGAGCAATATGAGAGAGTCCCCAGTGTTTTGGCACAGATGAAAAAGGATGGTGTTGCTCCAGACAGTTTCAGCTATAGGATTTGCATAAACTCTTACGGTACGATGTCTGATCTTACGAGTATGGAGAAACTGTTGGAAGAAATGGAACAGCAAAGCCACGTTGGATCAGATTGGATCGCATACTCTATGGTGGCTAACTACTACATCAAAGCAGACATGAAAGAGAAAGCTTTGATCTACCTGAAGAAATGTGAGGATAAAGCAAGCAAACACAATGCGGTTGCATACAATCATCTCATTTCGCACTATGCAAGTCTTGGAAACAAAAGAGCCATGATGAGATTGTGGAAACTTCAGAAAGTTAACTGTAAGAAGCAACTTAACAGAGAATATATAACCATGTTGGGTTGTTTGGTGAAGATTGGGGACCTTGACGAAACTGAAAAGTTACTTTTAGAGTGGGAGTTATCTGGTAATTTTTATGATTTCAGGGTTCCAAACATTCTTTTGATTGGATATTCGAAAAGAGGGTTGGTTGAAAAAGCAGAAACGATGTTGCGAAGCATGATTGACAAACAGAAGAATCCTACTCCAAACAGCTGGGCGATCATCGCTGCTGGATATGTTGCGAAGGAGAACATGGAGAAGGCATTTCAATGTATGAAGGAAGCTATGGCTGTAGAAGCTCAGAATAAAGGTTGGAGACCAAAAAGTAATCTTATTTCCAGCATATTGAGTTGGGCTACCAATAACAGAGATTTAGATGAAGTAGAAGATTTTGTTAATTCATTGAAGACTGTGATTTCAATGAATAGGGATATGTATTTGTCCTTGATCAAGATGTATGTTAGATGTGGTAAAGAAGTAGATAAGATATTAGAGAGTATGAGAACTGATAATATAGAGCTTGATGAAGAGATAGGGGAAATAGTAAACTCAAGATTGCAATAA 1485 0.3939 MASTIFLKSRNFTATFLLCRPYCSTVTNSRNLFSRISPLGDPSISVSPILENWLQEGNTLSAQHLQCIIKTLRNRRRFHQALEASEWMSSKGLCTISPTDHAVQLNLIGKVCGLDSVESYFQNLSDRDKTKKAYGALLNCYVREGLVDKSLSLMQKMKDMGFVSALEYNNIMCLYLQSEQYERVPSVLAQMKKDGVAPDSFSYRICINSYGTMSDLTSMEKLLEEMEQQSHVGSDWIAYSMVANYYIKADMKEKALIYLKKCEDKASKHNAVAYNHLISHYASLGNKRAMMRLWKLQKVNCKKQLNREYITMLGCLVKIGDLDETEKLLLEWELSGNFYDFRVPNILLIGYSKRGLVEKAETMLRSMIDKQKNPTPNSWAIIAAGYVAKENMEKAFQCMKEAMAVEAQNKGWRPKSNLISSILSWATNNRDLDEVEDFVNSLKTVISMNRDMYLSLIKMYVRCGKEVDKILESMRTDNIELDEEIGEIVNSRLQ 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02173 494 Gene3D Tetratricopeptide repeat domain 43 164 IPR011990 GO:0005515
Car07g02173 494 Gene3D Tetratricopeptide repeat domain 165 233 IPR011990 GO:0005515
Car07g02173 494 PANTHER OS12G0527900 PROTEIN 23 492 - -
Car07g02173 494 TIGRFAM PPR: pentatricopeptide repeat domain 345 370 IPR002885 -
Car07g02173 494 TIGRFAM PPR: pentatricopeptide repeat domain 133 163 IPR002885 -
Car07g02173 494 TIGRFAM PPR: pentatricopeptide repeat domain 168 200 IPR002885 -
Car07g02173 494 Pfam PPR repeat 309 336 IPR002885 -
Car07g02173 494 Pfam PPR repeat 133 162 IPR002885 -
Car07g02173 494 Pfam PPR repeat 345 370 IPR002885 -
Car07g02173 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 340 374 IPR002885 -
Car07g02173 494 Pfam PPR repeat family 168 210 IPR002885 -
Car07g02173 494 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 23 492 - -
Car07g02173 494 SUPERFAMILY HCP-like 141 404 - -
Car07g02173 494 Gene3D Tetratricopeptide repeat domain 405 493 IPR011990 GO:0005515
Car07g02173 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
Car07g02173 494 Gene3D Tetratricopeptide repeat domain 246 404 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02173 Car-Chr7 29986289 29988558 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02173 32 494 EF-hand Containing Proteins AT1G02150 30.538 4.60e-78 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02173 - - lja:Lj0g3v0287449.2 746.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g02173 07 29986289 29988558 Car07g02173 07 29986289 29988558 ECH