LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car07g01976	ATGTGGGAAGCCTGTAATCTATTTTACCCCACCCATCACCGACCATTTTGTCGGTGGATTATACGGAATGGAACTTTGATGAATTCTCTACAATTCTTTCACTTACATGCGATCTTTGATTTCATTTCGCTCTTCTTCGCAACTTACCTCTCTCTCTGCATTCGAAACAGTTTTGGGACAATGGCTAGGGTTTATATTGGTAATTTGGATCCTCGAGTCACTGAGAGGGAACTAGAAGATGAATTTCGTTTGTACGGTGTTCTCCGCAGTGTTTGGGTTGCTCGTAGACCACCAGGATATGCATTTATCGAGTTTGATGATCGGAGGGATGCCCTTGATGCAATTCATGCCTTGGATGGAAAAAATGGCTGGCGTGTAGAGCTTTCTCATAATTCTAAGGATGGAGGCGGGCGTGGTGGTGGACGTGGCGGGCGTGGAAGTTCAGacttgaaatgctatgaatgtggtgaaccaggacactttgctcgggagtgccGTGAACCGCGTGGTTCACGTGGCCTTGGGAGTGGAAGGAGACGAAGTCCTAGTCCTTATTATCGTCATCGTAGAAGTCCAAGTTATGGTTCTGGCCGCAGGAGTTATAGCCCACGTGGGAGAAGATCTCCAAGACGACTTAGCATAACACCTCCTCGTGGTCGTAGCTACAGCAGATCCCCTCCATATCGTTATTCTCGACGTGATTCACCTTATGCCAATGGTTTCCCTAGGATTGGCCGCAAAAAGGGTGCCTTGGACATTGTTTTGCGTCGGTTGTCTCTCGTCAGCATACTAAAACCCGGAGGTTTCTCTGTTTTGAGGTGTGGTTATCGGCCAAAACAGCATCGTTTCACCACTTAG	858	0.4476	MWEACNLFYPTHHRPFCRWIIRNGTLMNSLQFFHLHAIFDFISLFFATYLSLCIRNSFGTMARVYIGNLDPRVTERELEDEFRLYGVLRSVWVARRPPGYAFIEFDDRRDALDAIHALDGKNGWRVELSHNSKDGGGRGGGRGGRGSSDLKCYECGEPGHFARECREPRGSRGLGSGRRRSPSPYYRHRRSPSYGSGRRSYSPRGRRSPRRLSITPPRGRSYSRSPPYRYSRRDSPYANGFPRIGRKKGALDIVLRRLSLVSILKPGGFSVLRCGYRPKQHRFTT	285

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car07g01976	285	MobiDBLite	consensus disorder prediction	129	148	-	-
	Car07g01976	285	Gene3D	-	55	130	IPR012677	-
	Car07g01976	285	SMART	c2hcfinal6	151	167	IPR001878	GO:0003676\|GO:0008270
	Car07g01976	285	Pfam	Zinc knuckle	151	166	IPR001878	GO:0003676\|GO:0008270
	Car07g01976	285	ProSiteProfiles	Zinc finger CCHC-type profile.	151	167	IPR001878	GO:0003676\|GO:0008270
	Car07g01976	285	PANTHER	SERINE/ARGININE RICH SPLICING FACTOR	51	239	-	-
	Car07g01976	285	SMART	rrm1_1	63	129	IPR000504	GO:0003723
	Car07g01976	285	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	62	133	IPR000504	GO:0003723
	Car07g01976	285	MobiDBLite	consensus disorder prediction	164	243	-	-
	Car07g01976	285	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	64	121	IPR000504	GO:0003723
	Car07g01976	285	Gene3D	-	131	184	-	-
	Car07g01976	285	SUPERFAMILY	RNA-binding domain, RBD	61	147	IPR035979	GO:0003676
	Car07g01976	285	CDD	RRM_SRSF3_like	63	131	-	-
	Car07g01976	285	SUPERFAMILY	Retrovirus zinc finger-like domains	144	170	IPR036875	GO:0003676\|GO:0008270
	Car07g01976	285	PANTHER	SERINE/ARGININE-RICH SPLICING FACTOR RSZ21A-LIKE ISOFORM X1	51	239	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car07g01976	Car-Chr7	23078535	23082060	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car07g01976	K12896		-	pvy:116121334	209.92

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car07g01976	07	23078535	23082060	Car07g01976	07	23078535	23082060	ECH