Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01970 ATGAGGAATTGGATGAGCATGGCGATGGGTACAGTATCAAACTCCACACTTTTTCTATCCTTTGCATCACCCATTCACAAAACCATAATCCCCTTTTCTCTCACCAAAACGTCGCCGTATCTCATTTCTCGGCGCACCTTTTCTGTTTCCTCCCTTCCTTCTCTCTCCGCCGACAGCAACTTCAACTTCTCTCATTCTGGAGATGGAAATGGCGTTGCAGTTTCAACGAGAAGTTCGAAAGTGCTTCTTAAAGGGATGACTTACCCTGAACTTGAAAAATGGGTTCAATCACATGGATACAGACCAGGGCAGGCCATGATGTTATGGAAGCGTATGTATGGAAATGACATTTGGGCGCATCAGATTGATGAGTTGGAAGGTTTGAACAAAGATTTCAAGAAGATGTTGAGTGAAAAAGCAGATTTCAAGGCACTTGCGGTGAAAGATATTCACACAGCGAGTGATGGAACTAGGAAGATTTTGTTTACGTTAGATGATGGGATGGTCATAGAAACAGTCATCATACCTTGTGATAGAGGCAGGACTACTGTGTGTGTTTCCAGTCAAGTTGGATGTGCCATGAATTGTCAATTTTGCTATACTGGAAGAATGGGTCTTAAGAGACATCTTACTGCTGCAGAAATAGTCGAGCAGACCGTTTTTGCCAGACGGCTATTCACAAGTGAAGTTGGTTCCATCACCAATGTTGTATTTATGGGCATGGGGGAACCACTTCAAAACATTGATAATGTCATTAAAGCTGCAGATATTATGGTGGATGAGCAAGGGCTTCATTTCAGCCCCCGCAAGGTCACTGTTTCAACCAGTGGACTTGTTCCGCAGCTCAAACGTTTCCTCCACGAATCCAACTGTGCGTTGGCTGTTAGTTTGAACGCAACAACCGATGAGGTAAGAAACTGGATCATGCCTATAAATCGAAAGTATAAACTGGACTTGCTTCTTGAGACACTTCGGGAGGAGCTTTGCTTGAAACACAACTATAAGGTTCTATTTGAGTATGTGATGCTTGAAGGTATTAATGACAGCAATGAAGACGCAGAGAGGCTTATCAAGCTTGTGAAGGGCATCCCTTGCAAGATCAATCTCATCACATTCAATCCGCATAGTGGATCCTTCTTCAGACCAACAAAAGAGGAAAGGATAATTGAATTCAGAAATTTGCTAGCTGAGGGAGGATGCAGAGTCTTTTTAAGACCCAGTAGAGGCGATGATCAGATGGCTGCGTGCGGTCAGTTAGGCAAGCCCGGCACCATTCAAGCTCCGTTGCTCCGTGTACCTGAGCAATTCCAAATGGCAGTTGGAAGTTCAATGTGA 1335 0.4404 MRNWMSMAMGTVSNSTLFLSFASPIHKTIIPFSLTKTSPYLISRRTFSVSSLPSLSADSNFNFSHSGDGNGVAVSTRSSKVLLKGMTYPELEKWVQSHGYRPGQAMMLWKRMYGNDIWAHQIDELEGLNKDFKKMLSEKADFKALAVKDIHTASDGTRKILFTLDDGMVIETVIIPCDRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQTVFARRLFTSEVGSITNVVFMGMGEPLQNIDNVIKAADIMVDEQGLHFSPRKVTVSTSGLVPQLKRFLHESNCALAVSLNATTDEVRNWIMPINRKYKLDLLLETLREELCLKHNYKVLFEYVMLEGINDSNEDAERLIKLVKGIPCKINLITFNPHSGSFFRPTKEERIIEFRNLLAEGGCRVFLRPSRGDDQMAACGQLGKPGTIQAPLLRVPEQFQMAVGSSM 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01970 444 SFLD adenosine C2 methyltransferase (RlmN-like) 78 421 IPR004383 GO:0006364|GO:0008173
Car07g01970 444 Pfam Radical SAM superfamily 187 352 IPR007197 GO:0003824|GO:0051536
Car07g01970 444 PANTHER 23S RRNA METHYLTRANSFERASE 66 427 IPR040072 -
Car07g01970 444 TIGRFAM rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 76 420 IPR027492 GO:0030488|GO:0070475
Car07g01970 444 SUPERFAMILY Radical SAM enzymes 180 397 - -
Car07g01970 444 Gene3D - 80 142 - -
Car07g01970 444 CDD Radical_SAM 191 316 - -
Car07g01970 444 Hamap Dual-specificity RNA methyltransferase RlmN [rlmN]. 80 425 IPR027492 GO:0030488|GO:0070475
Car07g01970 444 Gene3D Aldolase class I 144 425 IPR013785 -
Car07g01970 444 Pfam 4Fe-4S single cluster domain 191 294 - -
Car07g01970 444 SFLD Radical SAM 78 421 IPR007197 GO:0003824|GO:0051536
Car07g01970 444 ProSiteProfiles Radical SAM core domain profile. 178 401 IPR007197 GO:0003824|GO:0051536
Car07g01970 444 PANTHER RADICAL SAM SUPERFAMILY PROTEIN 66 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01970 Car-Chr7 22868666 22878887 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01970 K06941 - gmx:100813692 706.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g01970 07 22868666 22878887 Car07g01970 07 22868666 22878887 ECH