Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01884 ATGGCTTTTTCTAGTTCCTTCCTTAAGCCAAACCATTCTTTTCTTCAATGCCACAAATACAAATCTCCAATTCCTCTTGGTTGCAGAAACCAGTTCTGTGTGATGGCTTCATCAAGCAGTAACACAAGTGATGGAGAAAGGACAATTATAAGGAAAGAGAAAGATGAGTGGAAGATTAATTTCTCAGCTCAGAAACCAGTAACACCATTATTGGATACAGTTAATCATCCAATTCATATGAAGAGTCTATCCACAAAGgatttGGAACAATTGGCAGCAGAATTAAGGGCTGACATTGTACACAGTGTGTCAAACACTGGTGGGCATCTTAGCTCAAGTTTGGGAGTGGTGGAGTTAGCAGTTGCCCTACATCATGTTTTCAACACCCCTGATGATAAGATCATATGGGATGTTGGCCATCAGGCATATCCACACAAGATTCTCACAGGTAGAAGGTCAAGGATGCACACCATTAGGAAAACATCAGGACTAGCAGGTTTTCCAAAAAGGGATGAGAGTGCTCATGATGCTTTTGGTGTAGGGCACAGTTCTACAAGTATATCAGCTGGTCTTGGCATGGCAGTTGCAAGGGATCTATTGGGAAAGAACAACAGTGTGATTTCAGTGATAGGAGATGGAGCAATGACTGCAGGACAAGCTTATGAAGCCATGAACAATGCAGGATTCCTTGATGCTAACTTGATAGTTATTCTTAATGACAACAAACAAGTTTCTTTACCAACTGCAACACTTGATGGCCCTGCAACACCAGTTGGAGCTCTTAGTAGTACTTTAAGCAAAATTCAAGCAAGCACTCAAATCCGAAAACTTCGAGAAGTTGCTAAAAGCTTCACAAAGCAAATAGGAGGACATACACACCAAGTTGCATCAAAAGTTGATAAGTATGCAAGAGGTATGATCAGTGCTTCTGGCTCTACAATCTTTGAGGAGCTTGGTTTATACTACATTGGTCCGGTGGATGGTCATAACATTGAAGATTTGGTTACCATACTTGAGAAAGTTAAATCAATGCCAGCACCAGGTCCAGTTTTGATTCATGTTGTGACAGAAAAAGGAAAAGGATATCCACCGGCTGAAGCAGCTTCCGATAAAATGCACGGTGTTGTCAAATTTGATCCTAAAACAGGTCACCAATTCAAGCCAAAACCCACAACACTTGCATACACACAATACTTTGCTGAATCTTTGATAAAGGAAGCTGAAATAGATAATAAGATAGTAGCAATTCATGCAGCAATGGGTGGTGGAACTGGCCTAAATTATTTCCAGAAAAAGTTTCCTGACCGATGTTTCGATGTCGGGATAGCCGAACAACATGCTGTTACATTTGCAGCAGGGTTAGCTGCTGAAGGCCTCAAGCCATTTTGTGCTATTTATTCGTCATTCCTTCAACGCGGATACGATCAGGTGGTCCATGATGTTGATCTTCAAAAGCTACCGGTCCGATTTGCGATAGATAGAGCTGGTTTAGTGGGTGCAGATGGACCAACTCATTGTGGAGCATTTGATATCACTTACATGGCTTGCTTGCCAAACATGGTTGTCATGGCTCCATCTGATGAAACTGAATTGATGCACATGGTTGCAACTGCAGCAGCTATAAATGACAGACCAAGCTGCTTTAGATTTCCAAGAGGCAATGGAATTGGAAGCAATCTTCCTCTCAATAACAAAGGAACCCCCCTTGAGATAGGAAAAGGAAGAATTCTGAGAGAAGGAAGCAGAATTGCAATTTTGGGATTCGGTTGTATAGTTCAACAATGTCAGGAAGCAGCAGAAATGCTTAAAACATTGGGAGTTTATGCAACAATTGCTGATGCTAGGTTTTGCAAACCTTTGGATACTGATCTAATTAGGCTACTAGCTAGAGAGCATGAAATACTCATCACAGTTGAAGAGGGTTCTATTGGAGGTTTTGGATCACATGTTTCACAGTTCTTAAGCTTAGCTGGTATCCTTGATGGACCACTTAAGTTGAGATCAATGATGCTTCCTGATAGGTACATTGAACATGGATCACCTAATGATCAGATGGATGAAGCTGGTCTTTCATCAAAGCATATTGCTGCCACAGTTTTATCTCTTTTGGAAATGCCAAAAGAAGCTCTTTTGTTCAAATGA 2142 0.4108 MAFSSSFLKPNHSFLQCHKYKSPIPLGCRNQFCVMASSSSNTSDGERTIIRKEKDEWKINFSAQKPVTPLLDTVNHPIHMKSLSTKDLEQLAAELRADIVHSVSNTGGHLSSSLGVVELAVALHHVFNTPDDKIIWDVGHQAYPHKILTGRRSRMHTIRKTSGLAGFPKRDESAHDAFGVGHSSTSISAGLGMAVARDLLGKNNSVISVIGDGAMTAGQAYEAMNNAGFLDANLIVILNDNKQVSLPTATLDGPATPVGALSSTLSKIQASTQIRKLREVAKSFTKQIGGHTHQVASKVDKYARGMISASGSTIFEELGLYYIGPVDGHNIEDLVTILEKVKSMPAPGPVLIHVVTEKGKGYPPAEAASDKMHGVVKFDPKTGHQFKPKPTTLAYTQYFAESLIKEAEIDNKIVAIHAAMGGGTGLNYFQKKFPDRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDITYMACLPNMVVMAPSDETELMHMVATAAAINDRPSCFRFPRGNGIGSNLPLNNKGTPLEIGKGRILREGSRIAILGFGCIVQQCQEAAEMLKTLGVYATIADARFCKPLDTDLIRLLAREHEILITVEEGSIGGFGSHVSQFLSLAGILDGPLKLRSMMLPDRYIEHGSPNDQMDEAGLSSKHIAATVLSLLEMPKEALLFK 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01884 713 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 70 704 IPR005477 GO:0008661|GO:0016114
Car07g01884 713 CDD TPP_DXS 107 362 IPR005477 GO:0008661|GO:0016114
Car07g01884 713 SUPERFAMILY TK C-terminal domain-like 567 704 IPR009014 GO:0003824
Car07g01884 713 ProSitePatterns Transketolase signature 1. 96 115 IPR005474 -
Car07g01884 713 Gene3D - 393 560 - -
Car07g01884 713 ProSitePatterns Transketolase signature 2. 499 515 IPR020826 -
Car07g01884 713 PANTHER 1-DEOXY-D-XYLULOSE-5-PHOSPHATE SYNTHASE 2, CHLOROPLASTIC-RELATED 1 713 - -
Car07g01884 713 Pfam Transketolase, pyrimidine binding domain 393 554 IPR005475 -
Car07g01884 713 Gene3D - 572 704 IPR009014 GO:0003824
Car07g01884 713 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 370 554 IPR029061 -
Car07g01884 713 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 71 356 IPR005477 GO:0008661|GO:0016114
Car07g01884 713 CDD TPP_PYR_DXS_TK_like 399 552 - -
Car07g01884 713 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 1 713 IPR005477 GO:0008661|GO:0016114
Car07g01884 713 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 73 703 IPR005477 GO:0008661|GO:0016114
Car07g01884 713 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 68 424 IPR029061 -
Car07g01884 713 Pfam Transketolase, C-terminal domain 572 695 IPR033248 -
Car07g01884 713 SMART Transket_pyr_3 393 558 IPR005475 -
Car07g01884 713 Gene3D - 63 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01884 Car-Chr7 21168941 21173647 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01884 436 651 Acyl Lipid Metabolism Gene Families AT3G13450 23.144 6.76e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01884 K01662 - gmx:100798930 1249.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g01884 07 21168941 21173647 Car07g01884 07 21168941 21173647 ECH